| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3528 |
|---|
| Symbol | |
|---|
| ID | 7260546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 3756306 |
|---|
| End bp | 3758066 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643563451 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_002459982 |
|---|
| Protein GI | 219669547 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.305202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA TACCTCTTTG GACGAACCGC CGCAAGAAGG ATGGAGATTA TGAGGGCTTT
CGGGACAAAT GGAAACAGCA GATCTCCCAT GAGGAAGGAT TCGGTCAATA TTTGCTAAGT
CGGCAAAAAA TCGACTTGGG TCAGTTATCC AGGGCTTTAG GGGAACAAAA GGAAACAGGT
GCCCGCTTGG GAGAAATTCT TGTTCGGCAC AAGGCACTTA CTTTGGAGCA ATTGCTACTT
GAGCTGGGTG GATATCTGGG TGTGACTAAA GTGGATTTGA CTCAGGTCGA TATTGACCCT
AAGGTAGCAT CCTTATTAAG TGAGCAGGCT GCCTGTCGTT ATGGTGCTAT TCCGGTAGGG
CTTAAGGATA GAATTTTGCA GGTCGCTATG TTTGACCCAG GAAACCATCA TTATGTGGAG
AATATTCGAA TATTAACAGG TTTTGAGGTC GAGCCACTGC TTGCTGATGA GGCCCAGGTG
GTGACGGCCA TCAAAAAATA TCTTACTGTG GAGAAAAGTA TTGCTGAGCT CAGCGGGCAG
GATGAACAAG AGTGTAAAGG GATAGGGCGG ATTAATACTC TTGACTCTGA GGAAGGAAAT
GACGCCCCAA CGATTCAATT GGTGGATTTT CTCCTTCGGG ATGCTATCAT GCTTGGAGCC
AGCGATGTCC ACTGGGAGCC GGGTAAGACG GTAATGCGGG TGCGCTACCG GATCGATGGG
AAGCTGGAGA CTAAGCGCTC TTTTCCTCTG GGGGTTGCCC GCAATGTGCT GGCCAGAATA
AAAATTATGT CAGGAATGGA TGTGGCGGAA CGAAGGCTGC CCCAAGACGG CAGGAGCAGT
TTTATGGTCG GCGCAAAGAC CATTGACCTG CGAATATCCA GTCTTCCCAC GGTCCATGGG
GAAAAAATCG TGATACGTAT TCTGGATCAG GATACAGCCC AACGATCCTT GCAATCTTTG
GGCATGAGCA GGGGGGTTGA GCAAAGTATT CAACGCTTAA TCAAGGAGCC TCATGGGATT
ATCCTCGTCG TAGGGCCCAC TGGCAGCGGA AAAACAACCA CCCTCTATGC CTTACTGAGA
GAACTCGTTT CTGAGCAGCT TAATCTGGTT TCTATCGAAG ATCCGGTGGA ATATCAGTTG
CCCGGAGTCG TATCCGTACA GGTCCAGCCC AAGATCGGCC TGACCTTTGC TCAAGGATTG
CGTTCCATAT TGCGGCAGGA TCCCGATGTG ATTATGATTG GGGAAATACG GGATGAAGAG
ACAGCCCGCA TTGCCATCGC TGCAGCCTTG ACGGGTCATT TGGTCTTGTC CACCTTACAT
ACCAACACAG CGGCGGAAGC TTTTACCCGT CTTTTGGATA TGGGGATAGA ACCCTATTTG
GTGGCGGCCG TTTTAAGAGG TGTTCTGTCC CAACGCTTAG TCCGCCGTCT CTGTGAACAG
TGTAAAGAGC CTTGGCACCT GGATCCCCTT GAAAAGGACG CCATGGATTT GCCGGAGAGC
GTCCGGCAGG TTTTTAGGGC AAAAGGTTGC CCTAAATGTC GGGGAACCGG TTATTCCGGA
CGTATCGGTA TTCACGAGTT ACTACTTTAC CATCAGGATA TTAAGGATTT AGTATTGGAA
GGTCAAAGTT CAGGAGCGAT CGAAGAAAAG GCTATAGCCA AAGGGATGAT TCCCCTGCGC
CGGGACGGCT ATAACAAAGT GCGCCAAGGT TTAACAAGCC TGGAGGAAAT CTGGTATTCA
ACTAGCGGTA TAATGCGATA G
|
|---|
| Protein sequence | MNKIPLWTNR RKKDGDYEGF RDKWKQQISH EEGFGQYLLS RQKIDLGQLS RALGEQKETG
ARLGEILVRH KALTLEQLLL ELGGYLGVTK VDLTQVDIDP KVASLLSEQA ACRYGAIPVG
LKDRILQVAM FDPGNHHYVE NIRILTGFEV EPLLADEAQV VTAIKKYLTV EKSIAELSGQ
DEQECKGIGR INTLDSEEGN DAPTIQLVDF LLRDAIMLGA SDVHWEPGKT VMRVRYRIDG
KLETKRSFPL GVARNVLARI KIMSGMDVAE RRLPQDGRSS FMVGAKTIDL RISSLPTVHG
EKIVIRILDQ DTAQRSLQSL GMSRGVEQSI QRLIKEPHGI ILVVGPTGSG KTTTLYALLR
ELVSEQLNLV SIEDPVEYQL PGVVSVQVQP KIGLTFAQGL RSILRQDPDV IMIGEIRDEE
TARIAIAAAL TGHLVLSTLH TNTAAEAFTR LLDMGIEPYL VAAVLRGVLS QRLVRRLCEQ
CKEPWHLDPL EKDAMDLPES VRQVFRAKGC PKCRGTGYSG RIGIHELLLY HQDIKDLVLE
GQSSGAIEEK AIAKGMIPLR RDGYNKVRQG LTSLEEIWYS TSGIMR
|
|---|
| |