Gene Dhaf_3527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3527 
Symbol 
ID7260545 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp3755255 
End bp3756289 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content48% 
IMG OID643563450 
Producttwitching motility protein 
Protein accessionYP_002459981 
Protein GI219669546 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.318184 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATAG AGCAACTATT AAAAGAAGCA GCTCAGCGAC GTGCCTCGGA TATTCATCTT 
ACAGTGGACA GTCCTCCAGT TTTCCGTATT GATGGTTCTT TGGTAAGGGC TGAAGAAGAG 
ATATTAACTC CCAATGTGCT GGATGAAATG GCGAGAACTT TAATGGACAG TGCTCAGAGT 
AGCAAGTTTA AAGAGTCTGG AGAAATAGAT TTTTCCCACA GCATTCCCGA TGTAGGTCGT 
TTCCGTGTCA ATGCTTTTCG CCAACGAGGA GCTGCGGGAA TCGCCATTCG TCTTATTCCC 
TTTAATATCT CGACACCGGA GCAGCTTGGT CTTCCCCCTG TCTGCATCGA GTTTGCCAAT 
TTACGCAAAG GGCTGGTTCT TGTGACGGGT CCTACGGGAA GCGGGAAGTC TACCACCTTA 
GCCTCAATGA TTGATTACAT CAATAGGACC AGGTCGGAGC ATATCGTTAC CGTTGAAGAT 
CCCATCGAGT ATATGCATAA ACATCGCCTA AGCTTAGTTA ATCAGCGGGA AGTGGGAAGT 
GACACCCAAT CCTTTGCCAA TGCTTTGCGA GCAGCATTGC GGCAGGATCC GGATGTAATC 
CTCGTCGGTG AAATGCGGGA TCTTGAGACC ATAAGTACGG CGGTGACGGC TGCAGAGACA 
GGGCATCTGG TATTTAGTAC CCTCCATACC AATGATGCTA CTCAGGCAGT GGACAGAATG 
ATCGACGTGT TTCCGCCTTT TCAGCAGCAG CAAATGCGGG TCCAGTTGGC AGCGGTTCTT 
CAAGGAGTTA TCGCCCAACA GCTGCTTCCT CGTAAGGATC AACAGGGAAG AGTTGCAGCC 
CAGGAAATTC TTGTTGTCAC ACCGGCAGTA AGAAATCTCA TCAGAGAAGG AAAGACCCAT 
CAAATTGCTA ACACAATGCA AACCGGCGGT AAACTTGGGA TGCAAAGTAT GGAGAAAGCT 
ATTCAGGAAC ATGTCCGGGC TGGACGCATC TCCAATGCAG TCGCGCAAGA AATGATACAA 
AATATGGGCC ACTAA
 
Protein sequence
MTIEQLLKEA AQRRASDIHL TVDSPPVFRI DGSLVRAEEE ILTPNVLDEM ARTLMDSAQS 
SKFKESGEID FSHSIPDVGR FRVNAFRQRG AAGIAIRLIP FNISTPEQLG LPPVCIEFAN 
LRKGLVLVTG PTGSGKSTTL ASMIDYINRT RSEHIVTVED PIEYMHKHRL SLVNQREVGS 
DTQSFANALR AALRQDPDVI LVGEMRDLET ISTAVTAAET GHLVFSTLHT NDATQAVDRM 
IDVFPPFQQQ QMRVQLAAVL QGVIAQQLLP RKDQQGRVAA QEILVVTPAV RNLIREGKTH 
QIANTMQTGG KLGMQSMEKA IQEHVRAGRI SNAVAQEMIQ NMGH