| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3488 |
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| Symbol | |
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| ID | 7260506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | - |
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| Start bp | 3721575 |
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| End bp | 3723470 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643563411 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_002459942 |
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| Protein GI | 219669507 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0451312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAATTC TCGCAAAAAT TGAGCAGCCC CGGGATTTAA AAGGACTGAC TTATCCTGAA
CTGGAACAGC TTGCTCAAGA AATCCGCGCT GAAATGATCG ATGTGGTCTC CGCCAATGGA
GGGCATCTGG CTCCTAATCT TGGCGTCGTA GAATTAACTC TTGCCTTGCA CCGGGTCTTT
GACAGCCCGA AAGATAAAAT CATCTGGGAT GTAGGCCATC AAAGCTATGT TCATAAACTG
GTCACAGGCC GGCAAAAGGA ATTTAAAAGC TTAAGGCTTT ATAAAGGTCT GTCCGGCTTC
CCGAAACGCT GTGAAAGCCC TCATGATTGC TTTGAAACAG GTCACTCCAG CACGTCTATT
TCCGCGGCGG TAGGCTTTGC CAAAGCAAGA GATCTTCGTA AAGAGAAGAA TCAAGTGGTT
GCCGTCATCG GTGATGGAGC CATGACCGGG GGAATGGCTT TTGAAGCATT GAATCATGCC
GGTCATACCA AAACCAATAT GATTGTGGTC CTTAATGATA ATGAAATGGC GATTGCCCAG
AATGTGGGAG CCATGTCTTC TTACCTTAAC CGGCTGCGTA CGGACCCCCG CTATGATCGC
AGCAAAGACG AAATTGAAAA TCTGCTGAAA AGGATTCCGG GAATCGGTTC CAAGATGGCC
AAGGCAGCGG AGAAAGCCAA AGACAGCTTA AAGTATCTGC TGGTGCCGGG ACTCTTATTT
GAAGAAATGG GTTTTACCTA TCTTGGCCCG GTTAACGGTC ATGATCAAAT CGCTTTGGAA
CAGGTTTTTG AACAGGCCAA GATGGTCAAG GAGCCTGTAC TTGTTCATGT TTTGACTCAA
AAAGGGAGAG GCTATGAGCC TTCGGAGAAA AACCCCGCTC TCTTTCATGG GGTGGGACCT
TTCAATAAGG TGACCGGGGA AGTGATCAAA AAACCGGCTC CCCCCACCTA TACCCAAGTC
TTTGGTGAGG CTCTGTGTGA ACTTGCGGAA AAGGATCCGC GGATTACAGC GATTACAGCG
GCCATGCCCA GCGGCACCGG TCTTAATCTC TTCGCTCAGA AATTTCCTGA TCGTTTCTTT
GATGTAGGAA TTGCGGAGCA GCATGCGGTG ACCTTTTCCG CGGCCTTGGC TTTTGGTGGC
ATGAAGCCTG TGGTGTCCAT TTATTCTACC TTTTATCAAC GTGCTTACGA CCAGGTTCTC
CATGATGTCT GTCTGCCCCA TGCCAATGTG GTCATGGCCA TTGACCGGGC CGGAGTGGTC
GGGGATGACG GACCAACCCA CCATGGAGTT TTTGATATTT CTTTTTTAAG AGTGATACCG
AATTTGGTGT TTATGGCGCC GAAGGATGAG AATGAGCTGC GCCATATGCT GTATACTTCT
TTGCAGCTGG ACGGACCGGT GGCCTTGCGT TATCCCCGTT CTGTGGGCCA AGGGGTGGAG
CTGACTGAGG AGCTGAGGGA GCTTCCCGTG GGTAAAGCCG AGATCCTTCA AGAAGGTAAG
GATATTACTC TGATCGGGGT GGGCCCGATG GTGTATACCT GCCTGGCTGC GGCGGTTGAG
CTTCGCCACC GGGGAGTGGA AGCCACCGTC ATTAATTTGC GTTATATTAA TCCTTTGGAT
AGAGAGTCAA TTCTGCGCTA TGCCCGGATG ACCAAGCGTA TCATCACTGT GGAGGACCAT
ATGCTGGCCG GCGGTATGGG CAGTGCCGTC ATGGAAGTTT TGGGCGATGA GGGGTTAACC
GATGTGGTCG TGGAGCGTTT AGGCTATGAC GAGTATGTGG ATCAGGGAGC CATCTCTCTG
TTGCATCAAG GGTATGGATT GTCTGTTGTT GGCATACTAA AGGCAGCGGA GCGTTTAAAG
GTTTTACAGC GGATTGAGGG TAGAAGCAGT GTCTAA
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| Protein sequence | MGILAKIEQP RDLKGLTYPE LEQLAQEIRA EMIDVVSANG GHLAPNLGVV ELTLALHRVF
DSPKDKIIWD VGHQSYVHKL VTGRQKEFKS LRLYKGLSGF PKRCESPHDC FETGHSSTSI
SAAVGFAKAR DLRKEKNQVV AVIGDGAMTG GMAFEALNHA GHTKTNMIVV LNDNEMAIAQ
NVGAMSSYLN RLRTDPRYDR SKDEIENLLK RIPGIGSKMA KAAEKAKDSL KYLLVPGLLF
EEMGFTYLGP VNGHDQIALE QVFEQAKMVK EPVLVHVLTQ KGRGYEPSEK NPALFHGVGP
FNKVTGEVIK KPAPPTYTQV FGEALCELAE KDPRITAITA AMPSGTGLNL FAQKFPDRFF
DVGIAEQHAV TFSAALAFGG MKPVVSIYST FYQRAYDQVL HDVCLPHANV VMAIDRAGVV
GDDGPTHHGV FDISFLRVIP NLVFMAPKDE NELRHMLYTS LQLDGPVALR YPRSVGQGVE
LTEELRELPV GKAEILQEGK DITLIGVGPM VYTCLAAAVE LRHRGVEATV INLRYINPLD
RESILRYARM TKRIITVEDH MLAGGMGSAV MEVLGDEGLT DVVVERLGYD EYVDQGAISL
LHQGYGLSVV GILKAAERLK VLQRIEGRSS V
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