| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3468 |
|---|
| Symbol | |
|---|
| ID | 7260486 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 3701529 |
|---|
| End bp | 3702791 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643563391 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_002459922 |
|---|
| Protein GI | 219669487 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAG ATTTAGCCGA ACAACCATTT AAATTCGATG ATGTTTTCAT GCAATATTAT
CCCTGCATCT ATAATTTTAT TCGCTGGCTA ATCCAGGACG AAGATTGCGC CCAGGATTTA
GCACAGGAAA CCTTTTTGCG TGCCTTCGTT AATCTTGGCA CAAGATCAGA GCATAATCTT
TCCCCTTGGC TGCATACCAT AGCCAGGAAT CTCTGTCATG ATTATTGGCG TAAAAACAAA
CGCAGGGGCG GCAGAGAGCT GCTGCTTCAG GATGCCTTCG AGTGTGAAGA TGAATCTTCC
AAGCCACTGG CGGCCATTGA AAATAAAGAG ACAGCCAAAC AAATCTATAA GATTTTAAAT
CTATTGAAAA GTGAACAGCG AACCGCACTG CTCCTCCGCG AAATCGAAGG ATTGTCCTAT
GACGACGCTG CCAGAGTTAT GGGAATCAGC GTGTCAGCCT ATACCTCTTT ATTGAATCGG
GCAAGAAACA AGTTCATTAA ACTGATCATG ACTCCTTATA CAAAGATAAA CAAAGGCCTT
TTCACTCCTA AAGAATACAC AGTCTTATAC CGCTGGTTCG GCATCGATGC CTGGCCGGAA
GACCCGGAAC AGGAGATCGT CCATAAGGCT AAGCATTACT TTGATAACTC TGCCCTCTCT
TTTGATGAGT TCAGGAATTC TCTTTACCCC TTTCACCTGG ATCAGGCTAT TTTAAACAGA
GTGCTCAATA AGGACCCCCA AATCATTGGG GATTTCGGCT CAGGAACCGG ACAGTTTACA
CTGAAGGCTG CTTCCTCAGT AAATCTTGAA AAAACCTACG CCTTCGACAT CTCACCGAAG
ATGGTTGACT TCTCCCAACA GCGTTTTAAG CGCGAAGGTC TCCGCCATAT CCAGTGCTTG
CCTGCGGATT TAAATTCTAT CCCTTTGGAA AGTGAAACCC TGGATATCGG GTATTGCCTG
GTTGTGCTTC ACCATCTTTA CGATCCCGGT AAAGCGATCA AAGAAATGAC CAGAACCCTT
AAGCCTGGAG GTCAGCTGAT TATCGGCGAT TTTGGTTCTC ACAATTACAA TCTGTTTACC
AAAAACAACA AAGATCTATG GTCCGGCTTC AGCCCGGACC AAATGACCAA ATGGTTCAAT
GAAGCCGGCT TGGAAAACAT CGATATCAGG GAAGAAAAGG ACTGTATTTT TAAGTCGACA
ACACAAGCAG GAGAACTTGT TAAAATACCC CTGCTTATGA GCAGTGGTAT CAAAAGAGCC
TGA
|
|---|
| Protein sequence | MSTDLAEQPF KFDDVFMQYY PCIYNFIRWL IQDEDCAQDL AQETFLRAFV NLGTRSEHNL
SPWLHTIARN LCHDYWRKNK RRGGRELLLQ DAFECEDESS KPLAAIENKE TAKQIYKILN
LLKSEQRTAL LLREIEGLSY DDAARVMGIS VSAYTSLLNR ARNKFIKLIM TPYTKINKGL
FTPKEYTVLY RWFGIDAWPE DPEQEIVHKA KHYFDNSALS FDEFRNSLYP FHLDQAILNR
VLNKDPQIIG DFGSGTGQFT LKAASSVNLE KTYAFDISPK MVDFSQQRFK REGLRHIQCL
PADLNSIPLE SETLDIGYCL VVLHHLYDPG KAIKEMTRTL KPGGQLIIGD FGSHNYNLFT
KNNKDLWSGF SPDQMTKWFN EAGLENIDIR EEKDCIFKST TQAGELVKIP LLMSSGIKRA
|
|---|
| |