| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3385 |
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| Symbol | |
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| ID | 7260403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | - |
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| Start bp | 3618912 |
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| End bp | 3620897 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 643563308 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein |
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| Protein accession | YP_002459839 |
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| Protein GI | 219669404 |
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| COG category | [I] Lipid transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1
[COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
[TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000070499 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAATCA TCCGGGCAGA AAAAGCCGGA TTTTGCTTTG GTGTTAAACG AGCTTTGGAT
ATGGCGGAGC GAACAGTTCA ATCTTCAAGT ACCGCTTCTT TGGGTCCCTT AATTCATAAC
CAACAGGTTG TGGAAAAAAT GGAGAAACAA GGGGTTCGTG TCGTCGGGGA AGTGAAGGAG
ACTCAAGCCG GGGACACCTT GATTATCCGC TCCCACGGAG TGCCTCCGGA TATCTATGAG
GAAGCCCGGC GCTGTCAAGT CAAGGTGGTG GATGCTACCT GCCCCTTTGT GCAAAAGGCT
CAGCGGCTGG CGGCAGAATC TTCCCAGTCC GGTCAGGTCG TGGTGGTGGG GGATCGGCAG
CACCCGGAAG TCCAGGGGAT TTTAGGCTGG GCCGGCGGCA ATGCCATTGC TATTGAGACC
CTTGAGGAAG CCAGGGAACT CCCCTTTTAT GAGCAGCTCT CCGTGCTTGC TCAAACAACC
CAGCCGGCTG CTAATTTCCA CGGGATTGTG GATGAGTTAA AAACCCATAC TCACGCGCTC
AAGGTACATA ATACGATTTG TAATGCCACT GAAGAGCGGC AGACCGTGGC CCGTGAATTG
GCCGGCAAAG TTGATGTGAT GATTGTGGTT GGGGGCAAAA ACAGTGCCAA CACCAGAAAA
CTGGCGGGGA TTTGCTCTGA ACGAACTCAG ACCTATCTCA TCGAAACCGC CGACGAATTG
GAAGATAACT GGTTCACAGG GGTGGTCACC GTAGGATTAA CGGCGGGAGC CTCGACACCA
GATTGGATTA TTGAGGAGGT TTATAGGAAG ATGTCAACAA TGGAAAACAA GGAAACTCAT
GAAATGATGA ATATGGAGGA CTGGGCCGAA GGAATGCAAA ATTTGCACCG GGGAGCTCTG
GTCACAGGAA CTGTGGTGAA AATCAATCAC GATGAAGTAT TTGTCGATTT AGGTTGGAAA
TCGGAGGGCG TTATCGCTTT GAAAGAGCTT ACCGTAGCTT CCGATCTGCA GACCAGCGAT
ATTGTAGCCA TCGGCGATCA AATCAGCGCC GTTGTTCTCC GTGTGGAGAA TGAAGAAGGG
AACCCGGTGC TCTCTAAACG CCGGGCTGAT GAAATGGCTG CCGTGGATAA GCTGAAAGAA
TTAGCGGAGA GTAAAGAAGA GATTCAAGGA AAAGTGGCCG ATGTGGTCAA AGGCGGGCTG
ATTGTTGATG TAGGTATGCG CGGCTTTGTT CCTGCCTCTC AAATTCAACC GGGTTACGTG
GAGGATTTGA ACCAATTTAA AGGCCAAACC CTCCGTCTCA GAGTGATCGA GTTTGATCCG
GCTAAGCGGC GCGTGGTCCT TTCCCAGAAA GAAATCCTCC AAGAAGAGCA AGCGGCTAAG
AAAGAGCATC TCCTGGCGAC CCTTCAGGAA GGGGATGTGG TCAGCGGTGT AGTGAAGAGG
CTGGCTCAGT TCGGTGCTTT TGTGGATATC GGCGGAGTGG ATGGACTGCT TCATGTTTCC
GATATAGCCT ATACCCGGAT TAAGCATCCT TCTGAATATG TCAATGTGGG GGATGAAGTA
GAAGTCCAAA TCCTCAAAGT GGATAAAGAG CAGGGCAAAA TTTCTCTGGG TCTGAAACAA
TTAAAACCCA GCCCCTGGGA AAGTGCTCCT GAAAAATATG CCTTAGGCTC TTTGGTTACT
GGAAAAGTAG TGCGCATCGC CCCCTTCGGA GCCTTTGTCC AACTGGAGGA TGGCATCGAT
GCTCTGATTC ATATTTCCCA GCTTTCCGAA AAGCGGGTCA ATAAAGTTGA AGATGTAGTG
AAAGTCGGTG ACATGGTTCA GGCTAAGGTC ATTGAATGCA AGCCGGAAGA GAAGCGGATT
AGCTTAAGTA TCCGTGAAGC CGCTGCCGAA GCACAGGCTA CGGAAGATGC AGAACTCTTG
GCCAGTCAGC CTGAAGCACC TCAGGTTACC ATCGGTGATG TGGTTCAATC TGAATCAGAA
TCCTAA
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| Protein sequence | MKIIRAEKAG FCFGVKRALD MAERTVQSSS TASLGPLIHN QQVVEKMEKQ GVRVVGEVKE
TQAGDTLIIR SHGVPPDIYE EARRCQVKVV DATCPFVQKA QRLAAESSQS GQVVVVGDRQ
HPEVQGILGW AGGNAIAIET LEEARELPFY EQLSVLAQTT QPAANFHGIV DELKTHTHAL
KVHNTICNAT EERQTVAREL AGKVDVMIVV GGKNSANTRK LAGICSERTQ TYLIETADEL
EDNWFTGVVT VGLTAGASTP DWIIEEVYRK MSTMENKETH EMMNMEDWAE GMQNLHRGAL
VTGTVVKINH DEVFVDLGWK SEGVIALKEL TVASDLQTSD IVAIGDQISA VVLRVENEEG
NPVLSKRRAD EMAAVDKLKE LAESKEEIQG KVADVVKGGL IVDVGMRGFV PASQIQPGYV
EDLNQFKGQT LRLRVIEFDP AKRRVVLSQK EILQEEQAAK KEHLLATLQE GDVVSGVVKR
LAQFGAFVDI GGVDGLLHVS DIAYTRIKHP SEYVNVGDEV EVQILKVDKE QGKISLGLKQ
LKPSPWESAP EKYALGSLVT GKVVRIAPFG AFVQLEDGID ALIHISQLSE KRVNKVEDVV
KVGDMVQAKV IECKPEEKRI SLSIREAAAE AQATEDAELL ASQPEAPQVT IGDVVQSESE
S
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