Gene Dhaf_3148 details

Gene Information

• Locus tag: Dhaf_3148
• ID: 7260159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 3365773
• End bp: 3367659
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 643563068
• Product: GAF modulated sigma54 specific transcriptional regulator, Fis family
• Protein accession: YP_002459607
• Protein GI: 219669172
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 54
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCCAC AGGAGAATTG GTTGAGGTTC GTTAATGGAG AACCGACGGT TCAGAATATT 
GCGCCTTTGA TTTACCGCTC TTGGCAACGA AGTCTGGCCC ACAATATTAA TCCTGCTGTT 
ATTTCAAACA ATAAGTTTCT TAACGACTCC GGCTTACGGG AATTGCGGGA ATCCCGGGAA 
GACCTGATCC GTGCTGCCGG CTCTGTCCTG CCTTTTCTGT TCCAGCTCCT CAACAGCTCT 
AATTTCTCCA TTCTGCTTGG GGATAAGGAT GCTTTTATTC TGGAATCCCT GGGGGATGGT 
CCTTTCTTAA GCAAAGCCCA GCGGATTTTC CTTTCGCCGG GGGGCAATTG GGGGGAAGAT 
GTCAAAGGAA CCAATGCCAT CGGCACAGCA CTTATCGAAG GCATGCCCGT TACCATACAG 
GGAATGGATC ATTATGTCCA GGAGAACCAC TTCCTGACCT GTTCAGCCGC ACCCATCCAC 
GGACTTCAAG GTGAAATCAT CGGTGTGATC GACATCAGTG CCGAAATAGG GAATCAGCAT 
TGCACTTTGG ACATAGCCCT GGTCGGGGCC CGTTTAATTG AGCAGAACCT GCGGCATTTA 
ACGATTGAAA GAGAGTTAAA ATTCTATCAA CAAGGGAGTA AGCTGGCTGT CGATCTTTTA 
AAGGACGGAT GTCTTTCCAT CGACCGGCAT GGCATGATTA CTCAAGTCAA TGCCACGGGT 
GCTTCTCTGA TTGGCCGGAA AAAAGACGAC CTGATCGGCC GGCATGTTAC CGATGTTTTA 
GGTGCTCCGA AAGGCTGGGT GCTGAATCAG GATACTCTTG ATTTAAGGCA TAAGGATGGC 
AAAGGCCATG AACTGGTGAC CCATTTTCAG CGCATATCCG ACAACTCGGG AAGCTCCTTG 
GGGGCTGTGG GTGTCATACA AATTATCGGA CAGAACCTTG ATAACTTGAG CTGGGTAGGG 
AGAACCAGCC TTAAATCACG TGAGATTCTG GAAAAAGCCC ACAAAGCGGC TCAAACCGAT 
TTCTCCGTCC TCCTGCAAGG GCAGACGGGA ACGGGAAAAG AGATTATTGC CCGCATGATC 
CATGAATTAA GCCCGCGCAA GAACGGGCCT TTTATTGCTC TTAACTGTGC CGCCATTCCC 
AATACCCTTC TGGAAAGTGA ATTGTTCGGC TACGCCGACG GCGCTTTTAC AGGTGCCCGC 
CGCGGGGGAC AACCGGGAAA ATTTGAACTT GCTCATGGCG GCACCATTTT CCTGGATGAG 
ATCGGGGATA TGCCGCTCAA TGCTCAGGTG GCCCTTTTGC GTTTGCTTCA GGAAAAGGCA 
CTGGTGCGCA TCGGAGGCAA AACCCTGCAG AAAATTGATG TGCGTGTGAT CACGGCTTCC 
CACAAAGATT TAAAGGCCCT TGTGGATGCC CATGCCTTTC GCCATGATTT GTTCTATCGG 
CTTAAGGTGG TGTCCATCGA GCTGCCCCCG CTCAGGGAGC GGCTGGAAGA CTTGCCTGAG 
CTGGTCACCC ATTTTATACA TAAAGCCTGC GCCGCTATCG GCCGGCCCAT GATCGACATG 
GCTGAGAGCG TCTATCCCTA TTTTTATTCC TATAGCTGGC CTGGAAATGT TCGCGAATTG 
GAAAATTGCC TGGCCGGGAT GGTCGCCATG TGCAACGGCT CTCTGCTCAC CGTCCGGGAT 
CTGCCTCCGG AAGTGAGAGA ATCCTTAAGT GAGAAAACTG AAGATGAAGA TGTTTCTCTG 
CTTGCTTCCC AAACCCGTCA GATTATTCTC CAGGCCCTGG TTAAGACTGA CGGTAAAATT 
CTGCCCGCTT CCCGGCTCTT AGGCATCAGC CGTACGACCC TATACCGAAA GATGAAAGAA 
TTGAAGATCA GCCTGCCCAG AACGTGA 

 

Protein sequence

MMPQENWLRF VNGEPTVQNI APLIYRSWQR SLAHNINPAV ISNNKFLNDS GLRELRESRE 
DLIRAAGSVL PFLFQLLNSS NFSILLGDKD AFILESLGDG PFLSKAQRIF LSPGGNWGED 
VKGTNAIGTA LIEGMPVTIQ GMDHYVQENH FLTCSAAPIH GLQGEIIGVI DISAEIGNQH 
CTLDIALVGA RLIEQNLRHL TIERELKFYQ QGSKLAVDLL KDGCLSIDRH GMITQVNATG 
ASLIGRKKDD LIGRHVTDVL GAPKGWVLNQ DTLDLRHKDG KGHELVTHFQ RISDNSGSSL 
GAVGVIQIIG QNLDNLSWVG RTSLKSREIL EKAHKAAQTD FSVLLQGQTG TGKEIIARMI 
HELSPRKNGP FIALNCAAIP NTLLESELFG YADGAFTGAR RGGQPGKFEL AHGGTIFLDE 
IGDMPLNAQV ALLRLLQEKA LVRIGGKTLQ KIDVRVITAS HKDLKALVDA HAFRHDLFYR 
LKVVSIELPP LRERLEDLPE LVTHFIHKAC AAIGRPMIDM AESVYPYFYS YSWPGNVREL 
ENCLAGMVAM CNGSLLTVRD LPPEVRESLS EKTEDEDVSL LASQTRQIIL QALVKTDGKI 
LPASRLLGIS RTTLYRKMKE LKISLPRT