Gene Dhaf_3019 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3019 
Symbol 
ID7260030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp3240110 
End bp3241153 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content48% 
IMG OID643562939 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_002459478 
Protein GI219669043 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.000434539 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAAA AAAATCCGCT TAGCTTACAA TTAAAGGTTG AAGATTTTCT GCCTGCAACC 
GATGCAGAAA AGCAAAGTCT CACCCAAATG CGCCCCGGTG TCAGCTTTTG GAAGGATGCC 
ATGCGGCGGC TCAGAAAAAA TAAGGTGGCT ATGATCAGCC TTACAGTCAT TCTGGTTGTT 
ATGTTTTTTT CTTTTATCGT GCCCAGCTTC TATCCTTATA AATATGAGCA GCAGATCAAG 
GGCTCTGAAT ATCTCAAACC CATGACCTAC TCCACTCAGG AACAACTGCG CATTGATGCC 
GGAGAAAAAG TGTTTCCCCA TATTCTGGGA ACAGATAATT TGGGCCGCGA TTATGCTGTC 
CGCGTGATGG TGGGCAGCCG CATCTCCTTA ATGGTAGGCT TAATCGCTTC CGCTATCATA 
TTGGTTATTG GTTCGACTTA TGGCGCTGTG TCCGGTTTCT TTGGCGGCTG GGTAGATCTC 
ATGATGATGC GTATCGTCGA TATTATTTAT ACAGTACCGG ATATTCTCCT GATTGTTCTG 
ATCTCTTTTG CTATCCGGGA TCCCTTGGGC ATCCTGGCGA CGAAGCCCGG TTTTGGATGG 
ATTCAGACGG TGGGGCCCAA CCTGATCAGT ATTTTTCTGG TGTTTGCCCT GCTGTATTGG 
GTGGGTATGG CGCGGATTGT CCGCAGCCAG GTGCTGGCCC TTAAGCAGAA TGAATATGTA 
ACCGCGGCCA GAGCTTTGGG TGCCGGTACA GGCCGCATTA TCCGCAAACA TCTTCTCACC 
AACTGTATCG GGACTTTGAT TGTTACCACC ACGCTGCAGA TTCCATCTTC TATTTTTACG 
GAGAGTTTTC TGAGCTTCCT CGGCTTGGGG GTTGCTGTTC CTTTGCCTTC TTTAGGTTCT 
CTGGCCAGTG ATGCCCTCAA CGGCCTGAAC AGTTATCCTT ATCTGTTGAT GGCGCCGGCT 
TTGCTGATCA GCCTGATCAT TCTTAGTTTT AACCTATTAG GCGATGGCTT GCGTGACGCA 
TTCGACCCTA AGATGAAGAG TTAA
 
Protein sequence
MTEKNPLSLQ LKVEDFLPAT DAEKQSLTQM RPGVSFWKDA MRRLRKNKVA MISLTVILVV 
MFFSFIVPSF YPYKYEQQIK GSEYLKPMTY STQEQLRIDA GEKVFPHILG TDNLGRDYAV 
RVMVGSRISL MVGLIASAII LVIGSTYGAV SGFFGGWVDL MMMRIVDIIY TVPDILLIVL 
ISFAIRDPLG ILATKPGFGW IQTVGPNLIS IFLVFALLYW VGMARIVRSQ VLALKQNEYV 
TAARALGAGT GRIIRKHLLT NCIGTLIVTT TLQIPSSIFT ESFLSFLGLG VAVPLPSLGS 
LASDALNGLN SYPYLLMAPA LLISLIILSF NLLGDGLRDA FDPKMKS