Gene Dhaf_3017 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3017 
Symbol 
ID7260028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp3238114 
End bp3239094 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content52% 
IMG OID643562937 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_002459476 
Protein GI219669041 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0887831 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGATA ATAATAAATT GCTGGAAATA CAGCACTTAA AGCAATATTT TCCGGTGAAA 
AGTGAAAAAC TGCTTGAGAA AAAAGTTGTC AAAGCTGTGG ACGATGTGTC CTTCTCTATC 
AATAAAGGTG AAACCCTGGG TCTTGTCGGA GAGTCAGGCT GCGGCAAGAC GACCACAGGG 
CGGACTTTGC TGCGGCTGCA TGAACCCACC GGGGGTAAAA TCTTCTACGC AGGAAAAGAT 
ATTACTCATG TGAATATGCT GCCTTACCGG CGGAAAATGC AGATTGTCTT TCAGGATCCC 
TATGCCAGTC TTAACCCGCG CATGACTGTA GGGGACATTG TGGGGGAGGC CATCGATATT 
CATCGTTTGG CAGCCAATGC TCAGGAACGC CGGGACCGTA TTGTGGAGCT TTTAAGCCTG 
GTGGGCCTGA ATACAGAACA TGCCAACCGC TATCCCCATG AATTTTCCGG CGGACAACGC 
CAAAGGGTGG GCATCGCCCG TGCTCTGGCT GTAAATCCTG AGTTTATCGT CTGCGACGAA 
CCTATTTCGG CGCTGGACGT ATCCATTCAG GCTCAGGTAG TCAATATGTT TGAAGAACTT 
CAGCAGCGTA TGGGATTGAC TTATCTGTTT ATTTCTCATA ATTTGAGCGT TGTCAAGCAT 
ATATCTAACC GTATCGGCGT TATGTATCTG GGAAAGCTGG TGGAGCTGGC CGACAGTTAT 
GAACTGACCT TTCACAGCGT CCATCCTTAT ACCCGCAGTT TGATATCGGC GATTCCGATT 
GCCGACCCCA AGGTTTCCCG CAGCACTCAG CGCATCGTGC TGGAGGGCGA TGTCCCCAGC 
CCCGTCAATC CCCCCTCCGG CTGCCGTTTC CGTACCCGGT GCGTTTACGC CGACCAGCGG 
TGTGCCGCCG AGGAACCGGA ATGGCGCGAG GTCTCGGCCG GTCACTTTGC CGCCTGCCAT 
CATCTGGACC GGGTGCAATG A
 
Protein sequence
MIDNNKLLEI QHLKQYFPVK SEKLLEKKVV KAVDDVSFSI NKGETLGLVG ESGCGKTTTG 
RTLLRLHEPT GGKIFYAGKD ITHVNMLPYR RKMQIVFQDP YASLNPRMTV GDIVGEAIDI 
HRLAANAQER RDRIVELLSL VGLNTEHANR YPHEFSGGQR QRVGIARALA VNPEFIVCDE 
PISALDVSIQ AQVVNMFEEL QQRMGLTYLF ISHNLSVVKH ISNRIGVMYL GKLVELADSY 
ELTFHSVHPY TRSLISAIPI ADPKVSRSTQ RIVLEGDVPS PVNPPSGCRF RTRCVYADQR 
CAAEEPEWRE VSAGHFAACH HLDRVQ