Gene Dhaf_3012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3012 
Symbol 
ID7260022 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp3232586 
End bp3233377 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content49% 
IMG OID643562931 
Productpolysaccharide deacetylase 
Protein accessionYP_002459471 
Protein GI219669036 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR02764] polysaccharide deacetylase family sporulation protein PdaB 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.000529365 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTA TTGTCTTTAA ACGACCGGCT TTGCGCAATG CTATGCTCTG GGCTATCCTC 
TTATTCGTAG TCCTTGCTTA TCGTGAAAAT GTTATAGCAG TCTTTTCCAG CAAGCTCAAG
CCCATTTACT CAGCAGAAGT TACCACCAGT GAAATTGGCC TGACTTTTGA TATCAGCTGG
GGAGAAAAAA CCCCGGAACC GATTCTGGAT ATTTTGCAGG AAAAGGGCGT CAAAGCTACC
TTCTTTTTAT CCAGCCCCTG GGCTGCCAAA CATGAAGATC TGGTAAAACG CATGGTGGCG
GACGGTCACG AAATTGCTTC CCATGGCAAT CGGCATATTG ATTTAAACAC GTTAAGCCCG
GGAGAGATTG AGCGTGAAAT TATGAGTGCC CACGAAGTTC TTCAACAGAT TACCGGTCAG
AAAATCTCCT TGCTGAGACC ACCTAACGGG GCTTATGATA ATAAACTGAT CAGTGTCTCA
CAACGGCTCG GCTATCAAGT CATTCAATGG AGTGTGGATT CCCTGGATTG GAAACGTCCC
GGACCGGAAG CGGTTATCCA TAATGTGCTG AATGGTCTTC CTAACGGGCA TGGTGCAGGG
CCGGGGGATA TCATCCTTTT CCATGCCTCA GACTCCGCTC CGGACACGAT TAAAGCCCTG
CCGGTGGTGA TCGATCAGCT GAGAGCCAAA AACTATCAAC TGGTCCCTGT CAGCCAATTG
CTGAAAAGCG CCACCAAAAC CTGGCCGCCG GAAAGCAATC TCCCGCCACT GGAGCAAACA
GGGTCCTCTT AA
 
Protein sequence
MKFIVFKRPA LRNAMLWAIL LFVVLAYREN VIAVFSSKLK PIYSAEVTTS EIGLTFDISW 
GEKTPEPILD ILQEKGVKAT FFLSSPWAAK HEDLVKRMVA DGHEIASHGN RHIDLNTLSP
GEIEREIMSA HEVLQQITGQ KISLLRPPNG AYDNKLISVS QRLGYQVIQW SVDSLDWKRP
GPEAVIHNVL NGLPNGHGAG PGDIILFHAS DSAPDTIKAL PVVIDQLRAK NYQLVPVSQL
LKSATKTWPP ESNLPPLEQT GSS