Gene Dhaf_2866 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2866 
Symbol 
ID7259874 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp3081726 
End bp3083837 
Gene Length2112 bp 
Protein Length703 aa 
Translation table11 
GC content47% 
IMG OID643562784 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002459325 
Protein GI219668890 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGGCT TTATTTCGAG TGGTCTTTCT TTGCTGGACA GCCAGGAATT GATTCTCTCC 
TCCCTTTATC TTGATGAAGA GACCTTATTG GCTGATGCTC TGCAGATCAT TTTAAAAGAG
GAACGAACTC ATCTGCCGGT AGTAAGCAAA GAGAAAAAAT TTCTGGGTGT TTTAGGGACT
GCCGATATTA TGGAAAGTTT AAGCCAGGGG AAGTTTGCTC CCAAGGCGCC GATTACATCC
TATATACGGC CGGTGGAGTG GCTACTTCCG GAGGAGAACA GCCTGCTTTT TAATTTCAAT
GTCTTGATTA CCGAAGGATG GCCCACCGCC TTTGTGGTTG ACAGCAAAGG CGAGTATCAA
GGTGAATTCA AATTTCATGA TAATCTGTTC CTGTTGTACC AACTGCTGAA CGACCTGGAT
TTTTATATCA GCCAAACCAT CGAAGCTGTT CATAATGCCG TGGTGGCTAT TGATGCTCAG
GGGCGCATCG TTTTCTTTAA CCCTTCCGCG GAAAAATTGC TGGGCTTTCA TGCTGAAGAA
GTCCTCGGCA AACCGATCAA AAACTTTTTT CCGGACTCCT TAACCTTTAA AGCGCTGGCA
ACAGGTGAAG AACTGCGGGG CATCCCTATG AGCTACGGTG AGCTTAACAC CAAGGCAGAC
TTCCTGCCCA TCATCCTGGG GCACAAGGTT CTGGGCGCAG TAGCCGTGTT TAAAGATATT
ACCGAACTGG AAGAGGTAAG CCATCGTCTG AATTCCAACG AAAAGCTGAT GGCCACACTG
GAGGCGGTGG TCGAGAATTC TTATGAAGGC ATGGTCGTCA TCGATGATCA AGAGAATATT
GTCCTGATGA ACCAATTCTT TTTGGATGTC ATCGGGGTCA AAGTGCAGGA TGTGATCGGC
AAAAAGATTA ATGATATCAG CCCTAATTCC AGTCTGCCTC AGACCTTGAA ATCAGGGAAA
GCCCAATTCG GCGAGACCTG GCATCTTAAG GGGCGTGATT TTATCATCAT GCGAGTCCCC
ATTGAACGGG AAGGCAAAGT CGTGGGGGCC TTGGCCAAGA CTCTTTTCAA AAACATGGAA
ATCGCCAAAA TGTTTGCCAA AAAAGTCATG CGCTTGGAAG AAAACCTCGC TTACTATAAA
GAAGAGTTGG GCAAATTCCA TTCCTCCCAA TTCGTTTTTG ATGATATTAT CGGGGAAAGT
CCCAGAATGA AAAAAGCCAA ATCCTTAGCA CATCGTGCCT CCCAAACAAC CTCCACCATT
CTGATCCTGG GTGAAAGCGG TACAGGGAAA GAAGTCTTTT CCCATGCTAT TCATAAATCA
AGTATTCGCA GCAACGGACC TTATATCAAA GTGAATTGTG CGGCATTGCC GGAAGACCTG
CTGGAATCAG AACTTTTTGG TTATGATGAA GGTGCGTTTA CGGGGGCCCG CAAAGGCGGC
AAGCCCGGTA AATTTGAACT TGCGGACAAA GGGACGATCT TTCTTGATGA GATCGGGGAT
ATGTCTCTGG GTATGCAGGC TAAACTGCTG CGGGTGCTGC AGGAACGTGA ACTTGAGCGT
TTGGGGGGGA CAGAACCCAT CAAAGTGGAT GTGCGGATTA TTGCCGCCAC GAACAGGGAT
CTGCACAAAA TGGTGATGGA GCATAAATTC CGCCTTGATC TTTATTACCG TCTCAATGTT
CTGACCATCG ATCTGCCCCC TTTAAGAGAA CGCAAAGAGG ACATCGGCTT TATTGCCAGA
GGACTTATTG AAAAAATCAA TAAGCGACTG GGTACGGACA TCCAGGGGGT GAGACCGGAA
AGCATTACCC ACTTGTGTGC TTATGACTGG CCGGGCAATA TTCGTGAACT GGAGAATATC
CTGGAACGGG CCATCGTCAT TTGTGATGAA GCCTGGATTT TGCCCAAGCA TTTGGCTTTG
CCGGGAGTTA TGGAAACCAT AACCTTAGGT GCGGAACAAA CCCTGGAGTA TGCTTTACAA
GCCGCAGAAC GTGAGATCCT TGATAAGACT CTCCGCCGCG TTCAGGGCAA CAAGGTACAG
GCTGCCCGAA TCCTGGGCAT TCACCGCTCC GTGCTCTATA AAAAGCTGGC TAAGTACAAT
ATTCAAGGGT AA
 
Protein sequence
MNGFISSGLS LLDSQELILS SLYLDEETLL ADALQIILKE ERTHLPVVSK EKKFLGVLGT 
ADIMESLSQG KFAPKAPITS YIRPVEWLLP EENSLLFNFN VLITEGWPTA FVVDSKGEYQ
GEFKFHDNLF LLYQLLNDLD FYISQTIEAV HNAVVAIDAQ GRIVFFNPSA EKLLGFHAEE
VLGKPIKNFF PDSLTFKALA TGEELRGIPM SYGELNTKAD FLPIILGHKV LGAVAVFKDI
TELEEVSHRL NSNEKLMATL EAVVENSYEG MVVIDDQENI VLMNQFFLDV IGVKVQDVIG
KKINDISPNS SLPQTLKSGK AQFGETWHLK GRDFIIMRVP IEREGKVVGA LAKTLFKNME
IAKMFAKKVM RLEENLAYYK EELGKFHSSQ FVFDDIIGES PRMKKAKSLA HRASQTTSTI
LILGESGTGK EVFSHAIHKS SIRSNGPYIK VNCAALPEDL LESELFGYDE GAFTGARKGG
KPGKFELADK GTIFLDEIGD MSLGMQAKLL RVLQERELER LGGTEPIKVD VRIIAATNRD
LHKMVMEHKF RLDLYYRLNV LTIDLPPLRE RKEDIGFIAR GLIEKINKRL GTDIQGVRPE
SITHLCAYDW PGNIRELENI LERAIVICDE AWILPKHLAL PGVMETITLG AEQTLEYALQ
AAEREILDKT LRRVQGNKVQ AARILGIHRS VLYKKLAKYN IQG