Gene Dhaf_2688 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2688 
Symbol 
ID7259695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp2892965 
End bp2894758 
Gene Length1794 bp 
Protein Length597 aa 
Translation table11 
GC content46% 
IMG OID643562608 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002459150 
Protein GI219668715 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCCTCC AGGAAGGTAC GAATACCTGC TTTTCCTATC TGAACCCTGG TGACACCATA 
GAAAAAGCTG TAAGTATTTT TTTGGATTTA AAGATCGCCA TCATTCCTGT TTTAGATCAA
GAAGGCCGCT TGTTGAGCAT CTTCAGCCAC AGCAGCCTTT ATCGCGCTGT TTTGGCTGGG
GCAAGATCCA AAGATCGGAT CGATCCCTAC CTTATTACCG ATGTCGTAAG TATCGCCAAT
GACATACCCG ACGAACAATT AGCCAATTTC GTGAAAATGA GTCCAGTCGG TTCTGTTCCC
GTCCTTAATA AAGAAGGAAA AGTGATCGGA CTTTTGTGCA AAGCCAAAAT GGTAACGACC
TTATTCAGGC ATTCCGAACA GGATCTCACG GATTTAGAGC ATACAGCCAA GGAATTGGAA
ACAGTTAAGG CTCTCAATGA AACTTTTGAT ACCGTTCTTA ATATCATCCG TGATGGCATC
GTCGTTGTCG ATGAAAAAGG AAAGATAACC CTTGTTAATC AAGCCATGGC GGATTTTTTA
ACCCTCCCTC CCGAAGAGAT GATCGGCAAA CCCATTGCCG AAATCATGTC GTCAAATCAA
TTGCATCATG TCGCCTGTAC CGGGCTGTCC CAAACCAGTG AAGTATTGAC CATACGCGGC
AAGCCTTTGA TCGTTTCCAA CTCGCCCATC ATCAAAGGGG GAAAGGTTGT GGGTGCTGTA
GGCAAGGCTG TGTTTCCTCA CCTTGCCGAG GCTCAGGAAC TTGCTGAAAA AGTGCGCTGT
TTAGAGCATA AAGTCACGTT TTTCCAGGAA GAATTACAAA AAAACAGGAC AGCTCAGGAC
ATCATGAAGG ATATGGTTGC CGAAAGTCCC CAAATGAAAA AACTTAAAGA TGAAATATCC
ATCGTCGCTA CCAGCACCTC AACCGTGTTA ATCACCGGGG AAAGCGGGAC CGGCAAAGAA
GGGGTGGCTC ATGCCATTCA TCTTGGCAGC GATCGGGGCA AAGGGCCTTT TATCAAAGTA
AATTGTGCGT CCATTCCCGA AAGTCTTATG GAATCAGAAA TGTTTGGTTA TGTCGGCGGC
GCTTTTACAG GTGCGGCGAA GAATGGGAAA CCGGGACGCA TCGAGCGAGC CGACGGCGGA
ACCCTTTTCT TAGACGAAAT CGGGGAAATG CCCCTGGCTT TGCAGGCGAA ATTACTGCGG
GTATTACAAG ATCGGGAAAT TGAACGGCTG GGAAGCACGG AAACAATCAA GGTCAATATT
CGTATCTTAG CCGCTACGAA TAAGAAATTA AGCAACGCTA TTGCGAAAGG GGAATTCCGG
CAGGATCTTT ACTATCGGTT AAATGTCATC AATCTCCATT TGCCTCCCCT TAGAGAACGC
CTTGAGGATA TTGAACCTTT GACCCATTTT TTCATCTCTA AATTTAACGA TATTCTTAAG
GCCAATGTGA GCGGCATCAC TCCTAATGCC ATGGCAACTT TGCTCCAATA TTCATGGCCG
GGGAATATCC GCGAATTGGA AAATGTGGTG GAAAGGGCGG TTAACTATAC GCGCAGCGGC
TTAATCGAAT TGATTCACTT ACCCCACCAG ATTATCAGCG GCAATACTGC CTTAGGTCAG
GTAATGAACA AGAAAACGAT TCGTCATCAG GATAGACTTG GTCAGATCGA GCGGGATATG
ATCGCTGCCG CTCTTGAGAA AGCAGGAGGC AACAAGACAA AAGCGGCCAA ACTTTTAAAC
CTCAGCCGTT CAAGGCTTTA CGACAAATTA AATAAATACG ATCTTAATAC TTAA
 
Protein sequence
MLLQEGTNTC FSYLNPGDTI EKAVSIFLDL KIAIIPVLDQ EGRLLSIFSH SSLYRAVLAG 
ARSKDRIDPY LITDVVSIAN DIPDEQLANF VKMSPVGSVP VLNKEGKVIG LLCKAKMVTT
LFRHSEQDLT DLEHTAKELE TVKALNETFD TVLNIIRDGI VVVDEKGKIT LVNQAMADFL
TLPPEEMIGK PIAEIMSSNQ LHHVACTGLS QTSEVLTIRG KPLIVSNSPI IKGGKVVGAV
GKAVFPHLAE AQELAEKVRC LEHKVTFFQE ELQKNRTAQD IMKDMVAESP QMKKLKDEIS
IVATSTSTVL ITGESGTGKE GVAHAIHLGS DRGKGPFIKV NCASIPESLM ESEMFGYVGG
AFTGAAKNGK PGRIERADGG TLFLDEIGEM PLALQAKLLR VLQDREIERL GSTETIKVNI
RILAATNKKL SNAIAKGEFR QDLYYRLNVI NLHLPPLRER LEDIEPLTHF FISKFNDILK
ANVSGITPNA MATLLQYSWP GNIRELENVV ERAVNYTRSG LIELIHLPHQ IISGNTALGQ
VMNKKTIRHQ DRLGQIERDM IAAALEKAGG NKTKAAKLLN LSRSRLYDKL NKYDLNT