Gene Dhaf_2688 details

Gene Information

• Locus tag: Dhaf_2688
• ID: 7259695
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 2892965
• End bp: 2894758
• Gene Length: 1794 bp
• Protein Length: 597 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 643562608
• Product: PAS modulated sigma54 specific transcriptional regulator, Fis family
• Protein accession: YP_002459150
• Protein GI: 219668715
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: 47
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCCTCC AGGAAGGTAC GAATACCTGC TTTTCCTATC TGAACCCTGG TGACACCATA 
GAAAAAGCTG TAAGTATTTT TTTGGATTTA AAGATCGCCA TCATTCCTGT TTTAGATCAA 
GAAGGCCGCT TGTTGAGCAT CTTCAGCCAC AGCAGCCTTT ATCGCGCTGT TTTGGCTGGG 
GCAAGATCCA AAGATCGGAT CGATCCCTAC CTTATTACCG ATGTCGTAAG TATCGCCAAT 
GACATACCCG ACGAACAATT AGCCAATTTC GTGAAAATGA GTCCAGTCGG TTCTGTTCCC 
GTCCTTAATA AAGAAGGAAA AGTGATCGGA CTTTTGTGCA AAGCCAAAAT GGTAACGACC 
TTATTCAGGC ATTCCGAACA GGATCTCACG GATTTAGAGC ATACAGCCAA GGAATTGGAA 
ACAGTTAAGG CTCTCAATGA AACTTTTGAT ACCGTTCTTA ATATCATCCG TGATGGCATC 
GTCGTTGTCG ATGAAAAAGG AAAGATAACC CTTGTTAATC AAGCCATGGC GGATTTTTTA 
ACCCTCCCTC CCGAAGAGAT GATCGGCAAA CCCATTGCCG AAATCATGTC GTCAAATCAA 
TTGCATCATG TCGCCTGTAC CGGGCTGTCC CAAACCAGTG AAGTATTGAC CATACGCGGC 
AAGCCTTTGA TCGTTTCCAA CTCGCCCATC ATCAAAGGGG GAAAGGTTGT GGGTGCTGTA 
GGCAAGGCTG TGTTTCCTCA CCTTGCCGAG GCTCAGGAAC TTGCTGAAAA AGTGCGCTGT 
TTAGAGCATA AAGTCACGTT TTTCCAGGAA GAATTACAAA AAAACAGGAC AGCTCAGGAC 
ATCATGAAGG ATATGGTTGC CGAAAGTCCC CAAATGAAAA AACTTAAAGA TGAAATATCC 
ATCGTCGCTA CCAGCACCTC AACCGTGTTA ATCACCGGGG AAAGCGGGAC CGGCAAAGAA 
GGGGTGGCTC ATGCCATTCA TCTTGGCAGC GATCGGGGCA AAGGGCCTTT TATCAAAGTA 
AATTGTGCGT CCATTCCCGA AAGTCTTATG GAATCAGAAA TGTTTGGTTA TGTCGGCGGC 
GCTTTTACAG GTGCGGCGAA GAATGGGAAA CCGGGACGCA TCGAGCGAGC CGACGGCGGA 
ACCCTTTTCT TAGACGAAAT CGGGGAAATG CCCCTGGCTT TGCAGGCGAA ATTACTGCGG 
GTATTACAAG ATCGGGAAAT TGAACGGCTG GGAAGCACGG AAACAATCAA GGTCAATATT 
CGTATCTTAG CCGCTACGAA TAAGAAATTA AGCAACGCTA TTGCGAAAGG GGAATTCCGG 
CAGGATCTTT ACTATCGGTT AAATGTCATC AATCTCCATT TGCCTCCCCT TAGAGAACGC 
CTTGAGGATA TTGAACCTTT GACCCATTTT TTCATCTCTA AATTTAACGA TATTCTTAAG 
GCCAATGTGA GCGGCATCAC TCCTAATGCC ATGGCAACTT TGCTCCAATA TTCATGGCCG 
GGGAATATCC GCGAATTGGA AAATGTGGTG GAAAGGGCGG TTAACTATAC GCGCAGCGGC 
TTAATCGAAT TGATTCACTT ACCCCACCAG ATTATCAGCG GCAATACTGC CTTAGGTCAG 
GTAATGAACA AGAAAACGAT TCGTCATCAG GATAGACTTG GTCAGATCGA GCGGGATATG 
ATCGCTGCCG CTCTTGAGAA AGCAGGAGGC AACAAGACAA AAGCGGCCAA ACTTTTAAAC 
CTCAGCCGTT CAAGGCTTTA CGACAAATTA AATAAATACG ATCTTAATAC TTAA 

 

Protein sequence

MLLQEGTNTC FSYLNPGDTI EKAVSIFLDL KIAIIPVLDQ EGRLLSIFSH SSLYRAVLAG 
ARSKDRIDPY LITDVVSIAN DIPDEQLANF VKMSPVGSVP VLNKEGKVIG LLCKAKMVTT 
LFRHSEQDLT DLEHTAKELE TVKALNETFD TVLNIIRDGI VVVDEKGKIT LVNQAMADFL 
TLPPEEMIGK PIAEIMSSNQ LHHVACTGLS QTSEVLTIRG KPLIVSNSPI IKGGKVVGAV 
GKAVFPHLAE AQELAEKVRC LEHKVTFFQE ELQKNRTAQD IMKDMVAESP QMKKLKDEIS 
IVATSTSTVL ITGESGTGKE GVAHAIHLGS DRGKGPFIKV NCASIPESLM ESEMFGYVGG 
AFTGAAKNGK PGRIERADGG TLFLDEIGEM PLALQAKLLR VLQDREIERL GSTETIKVNI 
RILAATNKKL SNAIAKGEFR QDLYYRLNVI NLHLPPLRER LEDIEPLTHF FISKFNDILK 
ANVSGITPNA MATLLQYSWP GNIRELENVV ERAVNYTRSG LIELIHLPHQ IISGNTALGQ 
VMNKKTIRHQ DRLGQIERDM IAAALEKAGG NKTKAAKLLN LSRSRLYDKL NKYDLNT