| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2627 |
|---|
| Symbol | |
|---|
| ID | 7259634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 2828725 |
|---|
| End bp | 2830029 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643562547 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_002459089 |
|---|
| Protein GI | 219668654 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.00662506 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTTA AAAAGGTAAT TAGCTTAACC ATGATATGCG CACTGCTGAT TTTAGGCACT
GCTGCTTGCG GAAAAAGCGA TACTAGCACG GTTGATCAAA GCGATGCTAA GGGCCAAGAA
CAGATAACCA TCACCTTTGT AAACTGGGCA AGTGCCGAAG AAGCAACTAA ACAATTAACG
CTGGATATGA TCAGTGAATT CGAGAAACAA AATCCGACGA TTAAAGTCAA GAATGTGCCG
ATGCCTTTTA GTGATGTTTT AAATCAGTTG ACGATTATGA ATAACGCAGG AAACGCGCCG
GATATTGCTC AGATTACTAA TGGCGACGGC ATGAGTTTAG CTTACATGGG GGCATTGGAG
CCGACTGACA ACCTTTTGTC GGAAGGATTC AAAGCTGATT TGAATAAGAC GGTCTATGAC
CTAGGGCTCA AGGATAACCA GCACTATACA ATTCCTTGGG CGGGGCAGCC GATGGGTTTC
TGGTATAACA AAAAACTCAT GCAAGATGCC GGATTGGATC CTAACAATCC ACCCCAAACT
TTGGATGAAC TGAACAAAGC CATGGACATT GCCAAGCAAA AGCTGCCTAA CAGCGTCGTG
ATGCTGCAAA TTGATACAAC GATCCGTACC ATGGGCTTAG AGCAAGAGTG GCCATTGATG
AATGCTTTTG GGGCAATTAG TGAAAATAGG ATCCAACCCA GCCAAATGGA ACCTTATGCT
GAATGGCTGC GAGATTTACT TAAAAAAGGC TATACTCTGC CAGGTAAAAA ATTAGGTGAA
TTCAGAGCTC TGGCCGCCCA AAACAACTTG CTTTTCGGCA TTGATCAGCC ATGTTTTAAA
GGAATTGTCC AAACTTATGA CAAATCCAAC AAAATGAGTG ATGAAGAATT CAATGAAATG
TGGGCCGTGA CAACCATGCC TGTTGGTGCG GATAATCTAA GTTACTCCGT TCCTGGTGAC
CACAACCTGG TTATCTTAAA GTCCTCCGAA CATAAGGAAG CAGCGGCCAA ATTCGCTGAG
TTCTTAGCCG GTGATGATTA TTCCCTCAAA AACTACGTAA TTCCCTTTGG TTACGTACCT
GTCGTTCAAA GTGCCGGCGA ACGTTTTCCA GATTCCTTTA AGGACCCTTC CCTGAAAGCC
TTCAGCGAAA AGATTCTGCA AACTGAAGTT CGGCCCCCCT GGGGACCAGA TTACAGTAAA
TACGCTACTG ACGTCATGAC CAGCATGCAG GAAATCATCA CCACAAGCAA ACCCGTTCCG
GATATTCTCA ATAGCCTACA GACAAAACTG CAGAACTATA AGTAA
|
|---|
| Protein sequence | MFFKKVISLT MICALLILGT AACGKSDTST VDQSDAKGQE QITITFVNWA SAEEATKQLT
LDMISEFEKQ NPTIKVKNVP MPFSDVLNQL TIMNNAGNAP DIAQITNGDG MSLAYMGALE
PTDNLLSEGF KADLNKTVYD LGLKDNQHYT IPWAGQPMGF WYNKKLMQDA GLDPNNPPQT
LDELNKAMDI AKQKLPNSVV MLQIDTTIRT MGLEQEWPLM NAFGAISENR IQPSQMEPYA
EWLRDLLKKG YTLPGKKLGE FRALAAQNNL LFGIDQPCFK GIVQTYDKSN KMSDEEFNEM
WAVTTMPVGA DNLSYSVPGD HNLVILKSSE HKEAAAKFAE FLAGDDYSLK NYVIPFGYVP
VVQSAGERFP DSFKDPSLKA FSEKILQTEV RPPWGPDYSK YATDVMTSMQ EIITTSKPVP
DILNSLQTKL QNYK
|
|---|
| |