Gene Dhaf_2476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2476 
Symbol 
ID7259447 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp2673540 
End bp2674217 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content46% 
IMG OID643562362 
ProductHAD-superfamily hydrolase, subfamily IA, variant 1 
Protein accessionYP_002458940 
Protein GI219668505 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.00341069 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTATAAAG CTTTATTCTT TGATGTGGAT GATACCCTGC TGAATTTCGA ACAGTGTAGC 
AGGGAAGCAC TGGGCAAGAC ATTCCGTCAT TTCAGTATGG ACTACGATGA CACCGTTTAC
GAGCTGTTCC GCAGCATAGA CCAGCGATTA TGGCTTCAGC AAAAGCAAGG CGAACTTACC
GTTCAGGATG TCATCAATCT TAGATTTCAA GAATTATTTA AACAGCTCCA GCTTGGGTGT
TCTCATATCC CTTTGCAGAC GATGTTCCAG GAGAGATTGG CGGAAGAGTT TTTCACTGAA
CCCCATGCGG CAGAATCCCT GGGCTATTTA AGCGCTCGCT ACCAACTCTT TGTGACCTCC
AACGGTATTT TGAAAACCCA GTTGAAGCGT CTGGAGTTAG CCGGCTTATT GCCGTATTTT
ACAGATGTAT TTGTCTCTGA CCATATCGGC CATGAAAAGC CCAGTGTCCG GTTTTTTGAG
GAGTGCTTGC AAAGAAGCAG GTTGAAGCCC AGCGAGGTGC TGCTCATCGG CGATAGCCTT
GAAGCGGATA TGGTCGGGGC CCAAACCAGC AAGATGGACT CTTGCTGGTA TAATCCCAAG
CATAGGAACA CGGATTCTGA TGTTGAGATT GATTATATTA TTTCAGATTT GCTGCAGCTT
AAAGACATAC TGCAATAA
 
Protein sequence
MYKALFFDVD DTLLNFEQCS REALGKTFRH FSMDYDDTVY ELFRSIDQRL WLQQKQGELT 
VQDVINLRFQ ELFKQLQLGC SHIPLQTMFQ ERLAEEFFTE PHAAESLGYL SARYQLFVTS
NGILKTQLKR LELAGLLPYF TDVFVSDHIG HEKPSVRFFE ECLQRSRLKP SEVLLIGDSL
EADMVGAQTS KMDSCWYNPK HRNTDSDVEI DYIISDLLQL KDILQ