Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_2373 |
Symbol | |
ID | 7259342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | + |
Start bp | 2561644 |
End bp | 2563686 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 643562258 |
Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_002458838 |
Protein GI | 219668403 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000104876 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGTTA CCGAAAAGAG TTTTTCTGAG CAAACATACT GGGAAGAGAT AGCACGATGT AAAACTCAAT TTGTGAATAA TGGAGAAGAC CCTTTGCTCA ATCCCTATCT GCGCAAGGAA GTGGCAGAAT CCTGGATCAG ATCAAAAAAC AATGGAGTTT TTCCCTGGAC ATCCTATAGT AAATACTACC TGACAGAGGA AGAGTGGGGG GTGCTGAAGG AGCAGAATGA GCGGCTTATT CATATAGCCC AACCTCTGAT CAGCAATTAT TTGGGGCTGG CCTCCACCAA TGGACATTCC CTGGAACTGT TTGACCCCAG CGGTGCCTTT TTGCTGGGGA TTCATATCAA TATTTCTTCA ACTCCCGTTC TCTCCATTGT GTTTAATGAA AGTACCACAG GTACCACCGC TCATGGTTTG GCGACTTATC ACAAGAAACC CTTCCAGTTA ATCGGACCGG AGAACTACCT TGATGTCTGG CAGAATATGA TCTGTTCTGC AGCCCCTATT TTGGATGAGA TGGGTGAAGT TCTGGGTACT CTGGCTTTGG TTCAGGATAT GGGGGAAAAA CCCTGGGAAA AGAACCGGTC TAACCTGCAT ATTCATTCCC TGGGCTGGGT CAGCTCTCTG GCAGAAGCTA TTGGCAACCA GATCAAAATT CAAAATAGTT ATGATGTTCT CAATCAGGTG AATAACGATT TAAGAAAGGC TACGGAAACC TTGAAAATTA TCCTGGAATT TATTGACGAA GGGGTGATCA CCATTGAGCC TAATGGGCGG ATTCTCAGTT CTAATCATGA GGGCAGCAGA ATATTGAATG TGAATCATGG CGAGATAAGA GGGCGAAACA TTGGGGAGTT TCTGCTGCCC AGGTCGGCGT TAATGGATTA TGTGGCCGAT AAGAAAACAG TAGATTACAT GGAGGAATAT GTGGTCAATG GCCGGGAAGA GAAGCAGTAT CTGGTGAGCT TGCGGCCGGT GTATAAGCAA GGCAATGACG AGCTGGATTT TGCCATTCTC CGTTTTAATC ATTCGGACAA GATCAACGCT CTGGTTAACA CCAGGAGCGG GGCTGTAGCA AAATTCCGGT TTGAAGATAT TGTGGGGCAA AGCGAAGCTA TGTTAAAAGC GAAGGCTTTA GCCAGGCGTT TTGCCAGAAC CCGTGAAAAT GTTCTTTTGC TGGGGGAGAG CGGGACAGGC AAGGAACTTT TCGCTCAAGC CATTCATAAC AGTCACCGCC CGGGAGGGCC TTTTATTGCT GTGAACTGTG CCGCCATGCC CCGGAATTTG ATCGAAAGCG AGCTTTTTGG CTATGAAAGC GGCTCTTTCA CCGGGGCGGA GAAAAATGGC CGGCCGGGCA AGATAGAATT GGCCAACGGG GGAACCCTTT TTCTGGATGA AATCGGCGAT ATGCCTATTG AGTTGCAGGC GGTGTTGCTG CGGGTTCTGC AGGATAAAAT GGTCATGAGG ATAGGAGGAA GAAATTACCG GCAGGTTGAT TTCCGTCTGA TAACGGCAAC CAATCAGGAT CTGAAACTCT CAGCCCAAGA AAGGAAGTTT CGTGAGGATC TCTATTTCAG AATTTCTGTT CTTAATATAG AGATACCCCC TCTGCGCAGC AGAGGCTTCG ATATTGCCAT ACTTGCGGAG CATTTTATTG AAAATTATGC CAAGCGGGTG GGACTGCCGG CTGCGGTGAT CAGCCCGGAG GCCAAACGAA GGATTTTGGA ATATAATTGG CCGGGCAATG TCCGCCAATT GGAAAATGCC ATGATCTATG CCGTGAACTT GTCCGAAGAG GGTCAGATTA TGCTCAGTCA CTTGCCCAAG GAGTTGAGCG AAAAAAGAAC GGCCTTGCCT ATGGTCAGTG AAAAGGAGTG TGATAAGCCG GAGGAACTGT TCTCCATGAA GGATCTGGAG AAAGTGACCA TAAAAAAGGC CTTGGAGAGA GCCGGCAATA GTGTGGCCAT CGCTTCGGAT TTGTTGGGAA TCAGTAAAAC CACTCTGTAT AGAAAATTAA AAGAACATAA TATTCACTAT TAA
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Protein sequence | MIVTEKSFSE QTYWEEIARC KTQFVNNGED PLLNPYLRKE VAESWIRSKN NGVFPWTSYS KYYLTEEEWG VLKEQNERLI HIAQPLISNY LGLASTNGHS LELFDPSGAF LLGIHINISS TPVLSIVFNE STTGTTAHGL ATYHKKPFQL IGPENYLDVW QNMICSAAPI LDEMGEVLGT LALVQDMGEK PWEKNRSNLH IHSLGWVSSL AEAIGNQIKI QNSYDVLNQV NNDLRKATET LKIILEFIDE GVITIEPNGR ILSSNHEGSR ILNVNHGEIR GRNIGEFLLP RSALMDYVAD KKTVDYMEEY VVNGREEKQY LVSLRPVYKQ GNDELDFAIL RFNHSDKINA LVNTRSGAVA KFRFEDIVGQ SEAMLKAKAL ARRFARTREN VLLLGESGTG KELFAQAIHN SHRPGGPFIA VNCAAMPRNL IESELFGYES GSFTGAEKNG RPGKIELANG GTLFLDEIGD MPIELQAVLL RVLQDKMVMR IGGRNYRQVD FRLITATNQD LKLSAQERKF REDLYFRISV LNIEIPPLRS RGFDIAILAE HFIENYAKRV GLPAAVISPE AKRRILEYNW PGNVRQLENA MIYAVNLSEE GQIMLSHLPK ELSEKRTALP MVSEKECDKP EELFSMKDLE KVTIKKALER AGNSVAIASD LLGISKTTLY RKLKEHNIHY
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