Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_2324 |
Symbol | |
ID | 7259293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | + |
Start bp | 2510503 |
End bp | 2512119 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 643562211 |
Product | cell wall hydrolase/autolysin |
Protein accession | YP_002458791 |
Protein GI | 219668356 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase [COG2247] Putative cell wall-binding domain |
TIGRFAM ID | [TIGR02883] N-acetylmuramoyl-L-alanine amidase CwlD |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000000122542 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGTGGA AACGGATTTC TTTTTTGTCT TTAACAGTAA TTCTCCTTTT GAATCTTTTT CCCTTCACAG TTTTTGGTGC CGAAGCAACT GCAGAATCCT CTGCAACCGG AGCCGCTACG ATAAGATTAT ATGGTAAAGA CCGCACAGCC ACTTCTATCG CCGCATCCCA GCAAGGGTGG ACGACCTCGG AAACCGTCAT TCTCAATGAA TTGAATAATT ATGCCGATGC TATCGCCGCT ACTCCCCTGG CGGTTGGGCT GGATGCGCCG GTTCTTCTGA CCTATGGCGC TCATCTTGAT CCCCGGGTCA AAGAGGAATT AAAGCGCCTG GAGGCCAAAA AGGTGATTCT GCTGGGCGGC AATGGGCGGC TATCCACTTA TCTGGAAAAA GAACTCACTG AACTCAATTA TCAGTGGGAA AGAATTGGCG GACAGGATCG CTATGAGACA TCAACCCTCA TCGCGGCAAA GGTTCCCAGT GATACCATGA TTCTGGTCAA CGGAGACGAC TTCCCGGACG CTCTTTCCGC GGCGTCCTAT GCCGGAAGCC AACAGATCCC TATTCTTTTG ATGTCAAACC CTGAGTTTCC CCAAAGCGTA TCCGACTATT ATCAGCAGCA TAGACCCTCC CAGGTCATTG TGGTGGGGGG AGATGGCGTG GTTCCTGATC AACTGCTTGA GGAACAGAAT ATCCCTGTAA GTCAGCGTTT GGGAGGGCAG GACCGCTACG AATCAGCGGC TAAGCTCTAT GAGTATGCTC AAACTCAAAA CGTCTATGAT GCAAAGCAGC TTTATCTGGC TTCAGGTCAG CACTATCCCG ACGCCATGGT AGGAACCGTT CTTGCTGCCA AGAATAACTC GGCCCTGCTG ATTACGAAAA GTTATACTTT GCCTGAGTCC ATCGCTCCGA TTTTTAGCCC GGATAAGCTT GCCGCTATGG AGGTCTTTAT TCTGGGTGGC ACAGGTGTGG TTTCGGGGAA AATTCAGGCT GAACTGGAAG GCAAAGATTT TATTAAGAAC CTGCTGATTG GCAAAACTGT GGTTGTGGAT CCCGGTCATG GGTCTCCGGA CCCGGGAGCC ATCGGACCCG GCGGCTCCAA AGAGAAGGAT AATAATTTGG CTATTGCCCG GTATCTGGCC GTGGAGCTGG AAGCGGCCGG AGCCAAGGTG GTCTTGACCC GCAACGATGA CAACTCTCCG GCTTATGCTC CGGGAACACC CTACACGCAA AGAGGGGACC TGCAAAAACG TGTGGATATC GCCAATGAAA ACAATGCGGA TCTCTTCATC AGTATTCATA ATGACTCCTG GCAAACGGCT CAGGGCACGA CGACCTTCTA CTCCTCGGAA AACCCCAGTG GTTCTCCCAG CTACAAACTG GCCCAATATA TTCAAAGCGG GTTAACCCAG GAGATTGGCA CCAAAAATCT TGGTGTTAAG GATTCGCGGC TTTATGTGCT GAGGAACAAT ACCATGCCGG CAGTTCTGGT GGAAGTAGCT TTTATCTCTC ACCCAACCGA GGAGAAACAG CTCAGTGACA ACGCTTTTAG AGAGAAAGCC GCACAGGGAA TAAGTCAAGG AGTTCAAGCC TATATCCGTT ACCTTGAAAG AGTTTAA
|
Protein sequence | MQWKRISFLS LTVILLLNLF PFTVFGAEAT AESSATGAAT IRLYGKDRTA TSIAASQQGW TTSETVILNE LNNYADAIAA TPLAVGLDAP VLLTYGAHLD PRVKEELKRL EAKKVILLGG NGRLSTYLEK ELTELNYQWE RIGGQDRYET STLIAAKVPS DTMILVNGDD FPDALSAASY AGSQQIPILL MSNPEFPQSV SDYYQQHRPS QVIVVGGDGV VPDQLLEEQN IPVSQRLGGQ DRYESAAKLY EYAQTQNVYD AKQLYLASGQ HYPDAMVGTV LAAKNNSALL ITKSYTLPES IAPIFSPDKL AAMEVFILGG TGVVSGKIQA ELEGKDFIKN LLIGKTVVVD PGHGSPDPGA IGPGGSKEKD NNLAIARYLA VELEAAGAKV VLTRNDDNSP AYAPGTPYTQ RGDLQKRVDI ANENNADLFI SIHNDSWQTA QGTTTFYSSE NPSGSPSYKL AQYIQSGLTQ EIGTKNLGVK DSRLYVLRNN TMPAVLVEVA FISHPTEEKQ LSDNAFREKA AQGISQGVQA YIRYLERV
|
| |