| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2313 |
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| Symbol | |
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| ID | 7259282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 2499717 |
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| End bp | 2502662 |
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| Gene Length | 2946 bp |
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| Protein Length | 981 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 643562200 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002458780 |
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| Protein GI | 219668345 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.762814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCATT CATTATTGAG AGGGAGAGGT TGGCTGAAGG CGATCTTTCT TATGCTGTTT
TTACTTGGTG TCTCCATCAT ACCTAAGTTT GGTTATGCCT CCCAGGAGCC GGTCCATATC
CTGATTCTTA ACTCCTACCA CCAAGGGTTG GAATGGACTC ATGATCAGAC CGATGGAATC
CTGCAAAAAT TGCAAAGTCA CGGAGAGCAG CAGATTTATG TGGAATATCT GGATTGGAAA
AGGTACCCTA CCTTAGACAA TCTGAACAAC CAGTTTGACT ATTTACAGGC TAAATATACC
GGCCAGCAGC TGGATCTAAT TATAACCACG GACGATATGG CTTTGAAATT TGCCTTGGCT
CATCGCGGGG AAATTTTCGC CAATGCTCCC ATTGTTTTCA GCGGTATCTT AGAAAACAGT
GCCCAAGAAT TATTGCAGGG TCAGGAGCGG GTCACCGGGG TTTATGAGAT TCTTGATTCA
GAAGGGACCA TCAGGCTGGC TTTGGCCATT AATCCCCAAG TGAAGCATAT TTATGTTTTG
AACGATCTAT CGGAAAGCGG TCTGGCCTGT GGTGACGATG TGTTTGCTGC TGTCCGTAAA
ATCAATGGGG AAGAAGCCCG CGGACTGGTT GCTCACAGCC TCGCTTATTC GACCATCAAT
GAGATCCTTC ATAAAGTTTC GGCACTGGAT AATGACAGTA TCGTGTTGCT TGGCTCCTAC
AATATGGATA GCACCGGGCT GATATTATCC ACAGAAGATG TAGCCAGCGA AGTCAGCCGG
AGCAGCAGTG TACCCATTTA TTCTCTCTAT GAGTTTCTGC TGGATAGCGG GGTGACCGGC
GGCAGCTTAT TGAGCGGGCG TGTTCAAGGT GAACATGCGG CAGACCAGGC TCTCAAGATC
CTAGCAGGTC AGAATGTCGA TACAGTGCCC ATCATCAGGG AGCACACCTT TGTTGCGGGC
TTTAATTACA ATGAATTGAT GCGTTTCAAT ATCCCGGAAA AATTAATCCC TCAGGACAGT
ATGGTCATTA ATAAGCCTTT TTCCTTTGTG GATACTTACC GTTCCCTGGT CTATATAACA
ACCGGGGTCC TTTTGCTCCT CATCCTTTTG GTGACAGGCT TATTATTCAA TATCAGAAGA
CGAATTAAGG TAGAAACTAA CCTGAGAATC AAAAACGAAG AAATATCAGC CATGCATGAG
GAGCTTACAG CCACGGAGGA AGAGCTTAGA CAGCAATTTG ACGAACTGCT GAGCAATCAA
CGGCAATTGA AGGAGACTCA GGAACTCCAG GAATTGGTCC TTGAAGCGGC TATAGATGCT
ATTTGGGACT GGGATATGAT TCGGGATATT CGGGTTTACC ACTCCAAAAA CTCCTCCCTT
TTGGGATATA AAGGGGACGA AATCCGCAGT GTTGAGCATT GGAATGCCCT GATGCATCCC
GACGACAAAG CAGAATTTCA AAAGAAGCTG AATCAGCACC TGTTTGAGAA GACTGCCCGT
TACAGCTGCG ATTATCGGAT TAAGGATAAA GATGGAGAGT ATAAATGGAT CCGCGCCTTT
GGCAAGGCCT TGTATGACCA GAGTGGCAAT CCTTACCGGA TGGTGGGGTC TCACCGGGAT
ATTACAGACA TCAAAGAAAA AGAAATGCAT ATCAAGTATT TAGCTTATCA TGACTTTCTT
ACGGGGCTGC CCAACAGGGC TCAGATCCAG GAAATTATTA AAAGTGAAAT CCTCAAAGCG
GAGGAACAGG GCACCCTTCT TGGTGTTTTA TTCCTCGATA TCGATAATTT TAAAGCGATC
AACGATTCAT TTGGCCATCC TACAGGGGAT CAGCTTTTAA TCACAATCAG CCGTCATCTG
ACCCAAATCT TAGACAATCA TGTGGTAGCC CGTTTGGCTG GGGATGAATT CCTTATTCTT
ATCCGGGATA TTCAGGAAAA AGAGCAGGCC ATAGATTACG CAGAAAGAAT TATGAAGCTC
TTCGAGACAG CCCTCGTTAT TTATAAGCAA TATTGCTATA TCTCAACCAG TATCGGGATT
ACTTTCTACC CTCAGGATGG GGAGAGCTAT GAAAGCCTTT TGATCAACGC GGATACCGCA
ATGCATAAAG CCAAAGAATT AGGCAAGAGA AACTATGTCG TATTTAATAT GGAAATGAAA
AGAGCTGTGG TGGAAAAAGC GGAGATTCAA AACAATTTAC GGAAAGCCAT AGAATTTGAA
GAATTCGTTC TCCACTATCA ACCCCAAGTG GAACCCCATA CAGGAAAGGT GCTTGGTTTA
GAGGCCCTGA TACGCTGGGA AAAAGAGCAT AAGCTTATTC CCCCCAATAA GTTTATCGGA
GTTGCCGAAG AAACCGGACT AATCGTACCC ATTGGGGACT GGGTCGTTGC AACAGCCTGC
GCATTTCTGA AAAAGCTGCA TGATTTGGGT TACCGGGAGT TAACTATGTC CGTCAATATA
TCGGCACGCC AACTCCAGGA AGATCGATTC GTGGAAAAGG TCTTAAAAGT CCTCCGGGAT
AATGATCTTG ATCCAAGCAA GCTTGAGCTG GAGATTACGG AGACGATGCT GATTGAATTT
TTAGATGCTA AAATAAGCAA TGTCCTGGCC CGGCTGATTG AAAATGATAT CAAAATCTCT
CTGGACGATT TTGGCTTGGG GTATTCCTCC CTTAACTATA TTAAACAATT GCCTATTTCC
ACCTTAAAAG TGGATAAGTC ATTTATTGAT GACATACAAT CCACTCCGGA AAGCAAGAAT
ATCACCGGTT TAATCGTTAT CATGGCTCAT CAGCTGGGCT TAAAAGTGGT GGCTGAAGGG
GTGGAGAAAC CCGAACAAAG AGAGTATCTG ATCAAATACG ATTGTGATGC AATCCAAGGC
TATTTAGCCA GCAAGCCTCT GCCGGAAGAA GAGCTCATTA AAGTCCTGAA TAAGAATCTT
TTATGA
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| Protein sequence | MFHSLLRGRG WLKAIFLMLF LLGVSIIPKF GYASQEPVHI LILNSYHQGL EWTHDQTDGI
LQKLQSHGEQ QIYVEYLDWK RYPTLDNLNN QFDYLQAKYT GQQLDLIITT DDMALKFALA
HRGEIFANAP IVFSGILENS AQELLQGQER VTGVYEILDS EGTIRLALAI NPQVKHIYVL
NDLSESGLAC GDDVFAAVRK INGEEARGLV AHSLAYSTIN EILHKVSALD NDSIVLLGSY
NMDSTGLILS TEDVASEVSR SSSVPIYSLY EFLLDSGVTG GSLLSGRVQG EHAADQALKI
LAGQNVDTVP IIREHTFVAG FNYNELMRFN IPEKLIPQDS MVINKPFSFV DTYRSLVYIT
TGVLLLLILL VTGLLFNIRR RIKVETNLRI KNEEISAMHE ELTATEEELR QQFDELLSNQ
RQLKETQELQ ELVLEAAIDA IWDWDMIRDI RVYHSKNSSL LGYKGDEIRS VEHWNALMHP
DDKAEFQKKL NQHLFEKTAR YSCDYRIKDK DGEYKWIRAF GKALYDQSGN PYRMVGSHRD
ITDIKEKEMH IKYLAYHDFL TGLPNRAQIQ EIIKSEILKA EEQGTLLGVL FLDIDNFKAI
NDSFGHPTGD QLLITISRHL TQILDNHVVA RLAGDEFLIL IRDIQEKEQA IDYAERIMKL
FETALVIYKQ YCYISTSIGI TFYPQDGESY ESLLINADTA MHKAKELGKR NYVVFNMEMK
RAVVEKAEIQ NNLRKAIEFE EFVLHYQPQV EPHTGKVLGL EALIRWEKEH KLIPPNKFIG
VAEETGLIVP IGDWVVATAC AFLKKLHDLG YRELTMSVNI SARQLQEDRF VEKVLKVLRD
NDLDPSKLEL EITETMLIEF LDAKISNVLA RLIENDIKIS LDDFGLGYSS LNYIKQLPIS
TLKVDKSFID DIQSTPESKN ITGLIVIMAH QLGLKVVAEG VEKPEQREYL IKYDCDAIQG
YLASKPLPEE ELIKVLNKNL L
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