| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2290 |
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| Symbol | |
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| ID | 7259259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 2473536 |
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| End bp | 2476463 |
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| Gene Length | 2928 bp |
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| Protein Length | 975 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643562177 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002458757 |
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| Protein GI | 219668322 |
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| COG category | [R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG2984] ABC-type uncharacterized transport system, periplasmic component
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAATTA TTAGCACTCA TAACTTAATG AAAAAGCTCC TTATCATCCT GATTGCCTTG
ATAATTTTAT TTATTGGGCA AAAGCCATTA TTAATTCAAG CACAAACGAA CCAGCGGGTC
TTATTCATTA GTTCCTACTC GGAAAGCTTT GCAACCGTAC CGGAGCAAAT CGCCGGGATT
CACCAGGCTT TGGATCCGCA TAATATTCTG CTGGATATCG AATACATGGA TACCAAACGG
TTTGATACTC AGGAAAATAT CGATAATTTC TTTACTGCTC TGCGCTACAA ACTGGATAAC
CTTCAACCTT ATGATGCTAT CATTGTAGGG GATGATCGAG CTCTTGATTT TGCTATGGCC
TATCAGAAGG AGCTTTTTGA CGAGCTCCCT ATTGTTTTTT TAGGTATTAA TGATGTGAAC
CGGGCGGAAG AGGCAGCCTG CAATCCTTAC ATGACCGGTA TTGTGGAAAG TGTCCCCATT
AAGGAGAACA TAGAGCTGGC TCTGAAATTC AATTCCAATG TCCAGCGGGT TGTCGGCCTG
GTGGAAGGCA GCATCACCGG CAGGGGAGAG AAGGATCAAT TTTATGGAGC GGTAGGGTTT
TATCCCAGTC TGCGTTTTGA AGATATTAGT ATTTCTGAAC ATACCACTGA GGAAATGGCC
GATATCCTGC AGGAGATCCA GGATGATACT ATTATCTTAT TTTTAGGCAG TATGTATAAA
GACCAGGCAG GGCTTGATCT TACCATTGAT GAAGCGGCAG CCTTTATCAG TGCCAATACC
CAGGTTCCGG TGTATCGGGC GACCAGCGGC GGGGTGGGTC AAGGGTTTTT GGGAGGGGTT
CAGGTATCCT ACCGGGAGAC CGGGAAGAGA GCCGGAGGAA TGGTTTTTCA GCTGCTGCAG
GGAACTCCTG TCCAGGACCT GCCCATGATG AACGAGAGCC CTTATTATAC GATCTTTGAT
TATCAAATGG TCCAGCATTT TGATATTCCG GAAAGTCTGC TCCCTCATGA CGCCCTTTTG
CTCAATAAAA AGAGCAGCTA TTTTGAACAG AACATGAAGC TGCTTTTGGG TGTATTTGCA
GCTTTGTTTA TTATGTTAAT CATCAGCACC TTGATGGGGA TGGATAGTCT TAAACACCGT
ACCATGCAGC GGAAATTAAG GGAGAGCAAT GAAGAACTCT CAGCCACTTA TGAAGAATTG
GCAGCTACTG AAGAAGAACT TCGCCATCAA TACCGGCTTA TTGAAGAGAA CGTCCGGAGA
ATTGAACTTC TCAATCAAAA ATATGAGCAT GCTATTAACA GTACCAATAG CGTCGTCTGG
GAGCTTAATC TGAGCAATCG GAGCATCTAT TTCTCCCGGA ACTTTGAAAA CTGGCTTTCC
CGTCCATTTC CGTGGCATGA GCCGGTTGAT CAGCTTATGG ACAAATACCT TAATGAAAAG
ATTGTCCAAT TGCTTAATGA AGAAATTGCC GCTTATTTGA ACGGGGAAAA GAGTGAGATC
AAGGTTGAGT TTCCGGTGAA GTCCAGTGCC AAGCCATCCC GGTGGATCAA AGCACAGGGG
AAAGCCATCC GGGGAAGCAG CGAAGAAGAG ATCTTTCTTT ACGGAATTAT GACGGATGTG
ACGGACCAGA AGCTGCAAGA GGAGTATATT GATCACCTTG CTCATTATGA TTATTTAACC
AATCTGCCTA ACCGCATCTC CTTTATGGAA AAACTTCAGG AAGAGATTGA AAAAGCACTG
CCTTTATATA TTCTCTTGAT GGATATTGAT AATTTCAAGG AAATTAATGA TACCCTGGGC
CATGTTTGGG GAGATAAGGT CCTGAAAGCA GTGGCTCAAA AGCTGTTGGA TCATGCCTGC
CCCAATATGT TCATCTCCCG GTTCGGCGGC GATGAATTTC TTATCCTGAT GACGGATCGG
GATAGCTGTG ATATAGAGGA ATGCATCAAA CAGATTCGGA TCATGTTCTC CCAGCCCATT
TCCATTGAAC GCAATGAGTT TACCCTTAAG TTCAGCATGG GGATCACCCG TTATCCCGAG
GACAGTACAG ATATCGACCA GTTGATTATG AATGCGGATA CTGCTTTATA TCAAGTCAAG
CGCAGCGGCA AAAACCATCA CCTTCTCTAC AATAAAGAGA TGCAGCAGGA ACTCCGCAAT
AAGGCGGTTA CGGAAGGAAT TATTCGGAAA GCGGTACAGG AAGACGGATT CTATCTGGTT
TATCAGCCCC AAGTCAACGT AAAAACAGGC GAAATAGAGA GCTTTGAGGC TTTGGTGCGC
CTGAAGCATC ACCCTATTTC TCCTGATGTG TTTATTCGTA TTGCCGAGGA ATCGGATCTA
ATCTATCAAA TCGGCAGAGT TGTGACCAAA GAGGCCATTC GTCAGGCAGC AGCCTGGCGG
GACAAAGGAT ATCCCCGTAA GTCTATTTCC ATCAATTTTT CCAGCAAGCA GATCCGGGAC
AGGGATTATT TGCAATTCCT CGTGGATACC TTGGCGGAGT ATGAGATGGA TCCTCAGTGT
TTAGAAATTG AAATTACGGA GAGTATTTTA CTGGAAGAAA CTCATCTTAC CCTGGAGCTG
CTGGAAAAGA TCAAGGAATT AGGCATAAAA ATAGCCTTGG ACGACTTTGG CACAGGGTTC
TCCTCACTTA ACTACCTGAC CTATATACCG GTGGATAAAG TGAAATTGGA TAAGTCTCTC
TGTGATAAGT TTTTAAGCCC TGACAATATC AAGGTCATCG AGAGCATCAT TTCCCTGGCC
CACAGCCTTA ACCTGGTGAT CACTGCTGAA GGGATTGAAG AGCAATGGCA GTATGAGCAA
TTAAAGTTAA GCGGCTGTAA CAGCATCCAA GGGTATTTGT TCAGCAAACC ATTAGTAGCG
GAAGAAGCAG AAAAAATCTA TGAGAAAAAC TTTCTGGATT CGTTTTAA
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| Protein sequence | MGIISTHNLM KKLLIILIAL IILFIGQKPL LIQAQTNQRV LFISSYSESF ATVPEQIAGI
HQALDPHNIL LDIEYMDTKR FDTQENIDNF FTALRYKLDN LQPYDAIIVG DDRALDFAMA
YQKELFDELP IVFLGINDVN RAEEAACNPY MTGIVESVPI KENIELALKF NSNVQRVVGL
VEGSITGRGE KDQFYGAVGF YPSLRFEDIS ISEHTTEEMA DILQEIQDDT IILFLGSMYK
DQAGLDLTID EAAAFISANT QVPVYRATSG GVGQGFLGGV QVSYRETGKR AGGMVFQLLQ
GTPVQDLPMM NESPYYTIFD YQMVQHFDIP ESLLPHDALL LNKKSSYFEQ NMKLLLGVFA
ALFIMLIIST LMGMDSLKHR TMQRKLRESN EELSATYEEL AATEEELRHQ YRLIEENVRR
IELLNQKYEH AINSTNSVVW ELNLSNRSIY FSRNFENWLS RPFPWHEPVD QLMDKYLNEK
IVQLLNEEIA AYLNGEKSEI KVEFPVKSSA KPSRWIKAQG KAIRGSSEEE IFLYGIMTDV
TDQKLQEEYI DHLAHYDYLT NLPNRISFME KLQEEIEKAL PLYILLMDID NFKEINDTLG
HVWGDKVLKA VAQKLLDHAC PNMFISRFGG DEFLILMTDR DSCDIEECIK QIRIMFSQPI
SIERNEFTLK FSMGITRYPE DSTDIDQLIM NADTALYQVK RSGKNHHLLY NKEMQQELRN
KAVTEGIIRK AVQEDGFYLV YQPQVNVKTG EIESFEALVR LKHHPISPDV FIRIAEESDL
IYQIGRVVTK EAIRQAAAWR DKGYPRKSIS INFSSKQIRD RDYLQFLVDT LAEYEMDPQC
LEIEITESIL LEETHLTLEL LEKIKELGIK IALDDFGTGF SSLNYLTYIP VDKVKLDKSL
CDKFLSPDNI KVIESIISLA HSLNLVITAE GIEEQWQYEQ LKLSGCNSIQ GYLFSKPLVA
EEAEKIYEKN FLDSF
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