| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2273 |
|---|
| Symbol | |
|---|
| ID | 7259242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 2456449 |
|---|
| End bp | 2458089 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643562160 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_002458740 |
|---|
| Protein GI | 219668305 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000673972 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA ACAAGAAACG CTTTGCTATA GCTATCCTAT TGATAGCAAT CCTTGTCTTA
ACAGGATGTA CAGCAAACCA AAAAGCCATC TTCGATGCCT CAATGAAGAT GCAAAAGGTC
AATTCCATAC AACAGCATAT GACACTGTCT ATGGAACTCA AGGGTACAGG ACTGGACCCC
ATGATTCAGG AGCAAGTCGA TCAAGTGGCG GCGATGCTCA ATGACACAAA GATTGAACTT
AATCTTAAGA CCAAAACCAA TGAAAAGCAA ACCATGGTTC AATCCCAGGC AGATATGAAT
TTCAGTATGC CGGGACTGGA GATGAAGATG CCCCTCTGGA TCGACATGGA TCTCACAGGA
GATCAGCCTA AGTTTTTGGA GATCATTCAA ATGCCCCTCA TGGCTAAAGC ATCCTTGCCG
CCTGAGTACA TGAGCAAAGA GTATATGGTT ATGGACCTTG CCAATACGAG CAGCTCAGAA
TTAGCTCCGA TGGATATGAC CAAGCTGATG GACTTCAGTG TGAACTTTCA AACCAAGTGG
ACGGACTTTT TGATAAGTTA TGCTGACCGT TTTAACCCTG GCCTGGAGGT CGTCAGTGTG
CCCGTTCAGG ATCCTTCCAT CCAGAAATAC GCCATTCACC TTGATGACAA AGCATTTAAA
GCTTTGTTAA GCTACACTGT CAATAATTTT GCCCAAGATA AAGAAGCCCA AGGCTTTTTG
AATGATTATT TCCAAGCTGT TCTCGATCTG AGCGGCGGGG CCTCCTCTTT CGAAGGTGCC
CTGGATGCTG AAGAGATGTT TGGCGACTCG GAAAGCTCTG CAGAGGCTTT AAGCCAGTTC
AATGCGATCT TAGACTCCCT GCAGGATGTA ACTCTGGTCG GAGAGAGCGG TATTCAATTG
ATCTACACCA TTTCCGATGG TTACATTACC CAGACTGAAG GAAGCTTTGA TCTGCAGATT
GATTTGGCCC AAATGGCAGG CTTGTTGAAT ATTCCCAGTG AAGATGAGGA ATCAACAGAA
GTCAGCGGCA TCCTGAATTT TATCATTAAC TATAAGGCAG AGAATTCCAA TATCAATCAA
CCTCTTGATA TCCAAATTCC GGAATTAAGC ACGGAGAACT CTTTCGACTA CTTTGAATTT
ATGGAGGCCT CTTTGTCTGC GCTGGAGAAC GTTGAGGTAG GCGTTGAGGA AGTTATTCAA
GAACCTGCTC CGGAACCCGG CCCGGAACCT GTTCCACCGG CAGCCAATTC TTCTGAGGAG
TCCGTTGCAG CGGCATCCGC ACCTACGGAT TATACAGTGC AGCCGGGCGA TACATTAGCG
ACGATCGCGC TTAATCACTA CGGAAGCTAT GAACAGCATG CCGGCATCTA CCAAGCCAAT
TTGGCAGCTT TTAAGAAGAA TGGCAACCGG CTGGATGCAG GAATGGTCCT GACTCTTCCG
GCTGAAGGAC TGCTTGCACC ATTGCCTGCG GAGAACGTAA AGCAAGTCTA TACAGTAAAA
GCAGGGGATA CTTTAGGGAG CATAGCTAAA CAAATCTACG GTGACAGTTC CCTCTATACC
AAAATCTATG AAGCCAATCA AGAAAGATTA AAGAGCCCCA ACCTGATTTT TGAAGGGCAA
AAGCTGGTAA TCCCTAACTG A
|
|---|
| Protein sequence | MKINKKRFAI AILLIAILVL TGCTANQKAI FDASMKMQKV NSIQQHMTLS MELKGTGLDP
MIQEQVDQVA AMLNDTKIEL NLKTKTNEKQ TMVQSQADMN FSMPGLEMKM PLWIDMDLTG
DQPKFLEIIQ MPLMAKASLP PEYMSKEYMV MDLANTSSSE LAPMDMTKLM DFSVNFQTKW
TDFLISYADR FNPGLEVVSV PVQDPSIQKY AIHLDDKAFK ALLSYTVNNF AQDKEAQGFL
NDYFQAVLDL SGGASSFEGA LDAEEMFGDS ESSAEALSQF NAILDSLQDV TLVGESGIQL
IYTISDGYIT QTEGSFDLQI DLAQMAGLLN IPSEDEESTE VSGILNFIIN YKAENSNINQ
PLDIQIPELS TENSFDYFEF MEASLSALEN VEVGVEEVIQ EPAPEPGPEP VPPAANSSEE
SVAAASAPTD YTVQPGDTLA TIALNHYGSY EQHAGIYQAN LAAFKKNGNR LDAGMVLTLP
AEGLLAPLPA ENVKQVYTVK AGDTLGSIAK QIYGDSSLYT KIYEANQERL KSPNLIFEGQ
KLVIPN
|
|---|
| |