| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2239 |
|---|
| Symbol | |
|---|
| ID | 7259208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 2417250 |
|---|
| End bp | 2419574 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643562127 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_002458707 |
|---|
| Protein GI | 219668272 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAGCA TGCTGCAGAA GAAAGTTCTT CGGGATACAA AGGAGAATCG CTGGTCCTTT
CTGGCTATCG TATGCATTTG TTCACTAGGA ATTGCCCTGT TCAGCGGCAT CAACATGTAT
GTGACTACGG TCGAAGCCGC GGTATCCGAT GCCTATAAGC AGGCAAATCT TGCTGACTAC
TGGATTTATA AAGGGGAAAT TTCTCCTTCC CATTTGGCTG ACCTACGGTC TTTGGAGGAA
GTTCAAGAGG TTCAGCGGCG GAAAGTAACC GACATCACTC TCCCCGGAAC CCCAGGGGCG
GTGCTTCATC TGCACGCACT GGATGAAACA GCCACCATCA ATGTGCCGGA GCTTCTGGAA
GGCAGCGGAC TGGATGGGAG TGAAGCCAAC GCCCTTTTGC TGGACAGCCG CTTTGCTGAG
GCTCATGGAC TGTCTGCCGG CGACAGAATT ACGGCAGGAG AAGGGGAAAA ACAGACAAAG
TGGCTGATCC AAGGGATTGT CCGTGCCGGG GAATACATTT ATTACGCGCC GGAAGGCTTA
ACCGTTCCCG ACTACCAAAA ATATGGCTTC GCCTACACCA ATGCTTCCTC TTTGCCGGAG
GTTCCTTTCA ATGAAATCAT CCTCACTGTT GCTGAAGGCT CAACTCTTGC ACAGGCGGAA
GTTTCGGCCC AAATACGGGA AAGGCTGGCC GGAGCCAATA TCCTCAGCCG CCACCATCAG
ACAAGCTACC GGAAGGTTGC GGATGCTATG ACCGGGATCA AACAAATCGG CCTGCTGTTT
TCCCTGGCTT TTTTCCTGAC AGGGGCCCTG GTGACTTGGA TTACAGTATC CAGAATGCTG
GAGAACCAAC GCCAGCATTT GGGAACCCTT CGTTCTTTAG GCTACTCCAA AAAGGAAATT
ACAGGGAGGT ATGCGCTTTT TGGGGTTTTG ATCACCCTGC CCAGCATGAT TTTAGGCTGG
ATGATGGCCC GCTATCTGAT TGCGGAATTT TTGTACAGGA TTGGCATGAC CTATTACACC
ATCGAAGCTA CCGGTGTCAT CCCCTTTACG CCCCACTTCT TCCTGTCGGC CCTCTGTGTG
GCGGCGGTTA CCTGCGGCGG GGCCCTCCTC TCCTGCCGCA GATCATTGAA GCTGACACCG
GCTGCTCTGA TGAGACCCAA GCCACCGGCT CAAGGACACC GGATTTTTCT GGAGCGAATC
ACTCCTTATT GGCGCAGACT CAGCTTCAGC GGCAAAATCG TGACAAGGAA TCTGTTCCGC
AACAAAGGCC GGATGCTCAT GGGGCTTGTC GGCATTATCG GCTCCACTTC CCTGATTTTG
TGCGGCTTCA GACTGATGAA TTCCATTAAC GGGATGCTTG ACAGGGCCTT TAAGGAAACG
GTTCACTATG ACGTGGAAAT CAAACTCCGT ACTCCAGCCA CTGTCGAAGG GCTTGCTGAT
ATTTATAATA CATTGAGCAG CGGGCAGCAT GTGGACGCCA CCATGGCTCT CAGTGTCTAT
CTCTATGGGA AAGAGGGGGA TGTACAAAGC CCTTATCTTG TGGTGATGGA CGAAGGGCAA
AAAAGCCTCA ACTTCAAGGA TACAAAAGGT AAGGAGATTC CTTTACCTGA GGAGGGAGCC
TTGATTACTC TCAGAATGGC CAAGGCTCTG GCTGTGGACA TAGGGGATAC CCTCAGAGCG
GAAAGCCTGG ATGGAACGGT CATGGCCCTG AAGGTTGCTG ATATTGTAGA TTTCCCTGTG
GGTAATGAAA TCTACCTATC CAAAACCGCC TTTGCCAAGG TATCCGCTCT CCCCTTCCTG
GTCAGAACCC TTCTCATACA GGGCCGGGAT CTTGATTTAA GCAAGCTGAA CAGCGATCCG
AGAATTTCCC TGGTGGAAAC AAAGGAAGAA ATGCGCAGCA ATATGCTGAT TGTTTTGGAA
AGCCTGCAAA GCTTTCAAAT GATCTTGATT TTATTTGCGG GCTTGCTGGC CTTTGCCGTT
ATGATGGTCC TGGGCCGGAT GAACTACTAT GAGCGAATCC GCGAGCTTGC GACTCTGAAA
GTCCTGGGGT TTTATGAAAA TGAGATGAAA AGGCTGGTAT TGCGCGAAAC CATCTGGATT
ACCGTATTCG GCCTGCCTTT CGGCTACATC CTGGGCTCTT TGCTGCTGGG CGTCATTGTT
GACCAGGCCA CAACGCCGGA CTTGGAAATT CTGCCCATGA TTGATCTTTC CAGCATTGCT
GTGGGGTTCG CTTTCATGCT GGGCTTTACC ATGCTTGTAA ATTTCATGAT GGGGAGACAA
TTCAAAAAGG TCGATATGGT GGCATCCCTG AAAAGCGTGG AGTGA
|
|---|
| Protein sequence | MVSMLQKKVL RDTKENRWSF LAIVCICSLG IALFSGINMY VTTVEAAVSD AYKQANLADY
WIYKGEISPS HLADLRSLEE VQEVQRRKVT DITLPGTPGA VLHLHALDET ATINVPELLE
GSGLDGSEAN ALLLDSRFAE AHGLSAGDRI TAGEGEKQTK WLIQGIVRAG EYIYYAPEGL
TVPDYQKYGF AYTNASSLPE VPFNEIILTV AEGSTLAQAE VSAQIRERLA GANILSRHHQ
TSYRKVADAM TGIKQIGLLF SLAFFLTGAL VTWITVSRML ENQRQHLGTL RSLGYSKKEI
TGRYALFGVL ITLPSMILGW MMARYLIAEF LYRIGMTYYT IEATGVIPFT PHFFLSALCV
AAVTCGGALL SCRRSLKLTP AALMRPKPPA QGHRIFLERI TPYWRRLSFS GKIVTRNLFR
NKGRMLMGLV GIIGSTSLIL CGFRLMNSIN GMLDRAFKET VHYDVEIKLR TPATVEGLAD
IYNTLSSGQH VDATMALSVY LYGKEGDVQS PYLVVMDEGQ KSLNFKDTKG KEIPLPEEGA
LITLRMAKAL AVDIGDTLRA ESLDGTVMAL KVADIVDFPV GNEIYLSKTA FAKVSALPFL
VRTLLIQGRD LDLSKLNSDP RISLVETKEE MRSNMLIVLE SLQSFQMILI LFAGLLAFAV
MMVLGRMNYY ERIRELATLK VLGFYENEMK RLVLRETIWI TVFGLPFGYI LGSLLLGVIV
DQATTPDLEI LPMIDLSSIA VGFAFMLGFT MLVNFMMGRQ FKKVDMVASL KSVE
|
|---|
| |