Gene Dhaf_2047 details

Gene Information

• Locus tag: Dhaf_2047
• ID: 7259016
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 2208193
• End bp: 2209998
• Gene Length: 1806 bp
• Protein Length: 601 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 643561940
• Product: sigma54 specific transcriptional regulator, Fis family
• Protein accession: YP_002458520
• Protein GI: 219668085
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000000649144
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGATGT ATGATTTATT ACAGATGATC CAATCCGGCG AAGTCAATTC CCGATATTTT 
ACCAAGGTGA ACGATCAATG GAACCGTTTT CAGGAAGGCC GGGAAGTAGA CAACTCTGTC 
GTTCCCCAGG AATATCTCGA TTCTTGGAAA CGATGCAGAG CTTACGGGCT TGATCCTTAT 
GACCTAACAC TCTCCGTCGT GGAAAACCCA AAGCAGAAAG AGTTTTTCCT GAATACCGTG 
AAGAAATATG AGTTTTATCT GCAAAGCGTC TTTGAAATTT TTGATTTAAG TGACTTTTTA 
TTTAAACTGC AGACCAGAGA CGGAATCTGC CAGCTTCTGG GCCAGTCCAC ACTTACTTTA 
ATGGATTGTT CGGAGAAGAA CAGTGGAACA ACCAGCTCCA GCATCGTCCT TTACGAAGAT 
AAACCCGCTG TCATATTTCA GCCTTTTTAT TACCGCCAGA CCTATGTCAG GAAAAATTTC 
GGAGAAATAC ACGGGGCCTC GGCGCCAATT CATAATGAAA AAAATGAGTT GATCGGGGAT 
GTAGTTCTTT TGTATCATTA TCCGGAATTA AGCCTGCAGG CGTTTCATAT GGTTTCCTTG 
ATTGCCAAAA TATTCGACTA TCTATACTGG CCGCTTGCGT TCGGGCATGA AAGACAACTG 
GAGCAGATTA TGAATTGCCT TCCGCAAGGG ATAGCCCTGG GCAGCAAAAA AGAAACGATC 
AATTTTTGTA ATGAAAAAAT GGTGGATCTA TTTGAAATCA GAAAAAAACA GAATACCGGG 
CAGGGACGGA AAAAATCCCT GCCGGTATTC ATGAAAGCCC AAAATGATCT GTATACATTC 
AATCATATTA AAGGAAAAAG CCCTTTAATT CAGAAAGCAA AAAATACAGC CGAGAAAATC 
GCGGATACGT ATGTGCCGGT TATGATTTAT GGAGAAAGCG GAACAGGCAA GGAAATGTTT 
GCTCAGGCGA TTCATAACGC AAGCAGCCGC AGCGGCGGTC CGTTTATCGC GATAAACTGC 
GGGGCGATCC CGGGAGAACT GGTGGAAAGT GAGCTTTTTG GCTATGAGGA AGGAGCTTTC 
ACGGGTGCTT CGAAAGGCGG CAAGGTCGGA AAAATAGAAG CTGCGTCAGG AGGGACACTT 
TTTCTGGACG AAATTGAAAG TATGCCATTG AAGGACCAGA TTAAACTCCT GAGAGTCTTG 
TCAACCGGAA AAGTCCAGAA GATCGGAAGC ACGAAAGAAG TTCCAGTCAA TGTGCGCTTG 
ATTTCCGCTA CCAAAACCGA TTTACTGCAG CAGGCTGATG AAAGCTTATT CCGTGAGGAC 
CTGTACTATC GTATCAGCAC TTTCATAGTT GAGCTTCCGC CGCTCAGAGA ACGCAAGGAA 
GATATAATAC TCCTGGCTGA AGAATTCATT CAACGGCTGG AGAAAAGATA TTCCCGCTCT 
TCTATTGAAA TGGACTGGTC ATTTATCAAT GCCCTGCTCA GTTATAAATG GCGGGGCAAT 
GTGCGTGAGC TGGAGCATGC CATGGAGCAC GCGGTAATCA TGCTCGATAA GCAGTCTTCA 
CTTTTGCTTG AACATTTACC TGAGAAAATA CAGGATTACT ACCTGAATAA CACCACCGAA 
GAGATCGTAG AGGAAGCTAT GGAACATGAA AACAAATTCG GACTGCTGGC TCTGGCTGAA 
CAAAAAATGA TTGAACGGGT GCTGGACTCT GTGGATGGCA ATATCAGCGC GGCCGCAGAA 
CAGCTGGGGA TTAACCGCCG GACCATCTAT CGAAAGCTGC AGCGCAAAGA GACCTTGGAC 
TCATAA 

 

Protein sequence

MQMYDLLQMI QSGEVNSRYF TKVNDQWNRF QEGREVDNSV VPQEYLDSWK RCRAYGLDPY 
DLTLSVVENP KQKEFFLNTV KKYEFYLQSV FEIFDLSDFL FKLQTRDGIC QLLGQSTLTL 
MDCSEKNSGT TSSSIVLYED KPAVIFQPFY YRQTYVRKNF GEIHGASAPI HNEKNELIGD 
VVLLYHYPEL SLQAFHMVSL IAKIFDYLYW PLAFGHERQL EQIMNCLPQG IALGSKKETI 
NFCNEKMVDL FEIRKKQNTG QGRKKSLPVF MKAQNDLYTF NHIKGKSPLI QKAKNTAEKI 
ADTYVPVMIY GESGTGKEMF AQAIHNASSR SGGPFIAINC GAIPGELVES ELFGYEEGAF 
TGASKGGKVG KIEAASGGTL FLDEIESMPL KDQIKLLRVL STGKVQKIGS TKEVPVNVRL 
ISATKTDLLQ QADESLFRED LYYRISTFIV ELPPLRERKE DIILLAEEFI QRLEKRYSRS 
SIEMDWSFIN ALLSYKWRGN VRELEHAMEH AVIMLDKQSS LLLEHLPEKI QDYYLNNTTE 
EIVEEAMEHE NKFGLLALAE QKMIERVLDS VDGNISAAAE QLGINRRTIY RKLQRKETLD 
S