| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_2016 |
|---|
| Symbol | |
|---|
| ID | 7258985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 2169384 |
|---|
| End bp | 2170937 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643561909 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_002458489 |
|---|
| Protein GI | 219668054 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGTGC AATTAAAGAG CGAAGAACAG CAACAGCTGA AAGAGCAAGT CAAAGGCAAA
AAAAGCAGGA AAGGGATAGT TCTGGCCATC TTAACGGTTA TCGTCCTGAT TGCCGGTTGT
GCAGGGTTTT ACTATTTTAA TGAGAACAGC CGCTATTTCA CCACGGATAA TGCTAAAGTC
ACAGCGAAAA TGTATACCAT CACCCCCAAT GCTTCAGGGG AGTTGCTGGA GTGGAAGGTA
AAAGAGGGTG ATCTGGTAGA GAAGAATCAA GTTCTCGGAC GCCAGGCAGT TTTACCCTAT
ATCACTTCAC CGATTCAGGG CACGGTCATT AAAAATAACT CAATTCAAGG GCAAGCAGTG
ACCCCTGCTT CCCAATTGGC GGTCATTGCG GATACGGATC ACCTTTATAT CGGGGTGAAT
ATCGAAGAAA CAGATATTGC CAGGATTAAG GTGGGACAAC GGGTGGATGT AAAGCTGGAT
GCCTATCCCG GTGTAACCTT TCCAGGGAGG GTTCAGGAGA TCGACCGGGC TACCCAAACG
TATTTCTCCG GCGCCTCAAG CTTCAGTACC AGCGGCACCT ATGCCAAGGT AACCCAGTTG
ATCCCTGTCA AAGTGGTGAT TGACAACCAG GATAATCTGC CTTTGACCTT TGGGATGAAT
GCCACAGTGA AAATTCACAT TAAGGAAGAA CCTGTCAACA CTCCGTCAGG TGCTCAAGGG
GGCGAAAACA CCGACTCCCA GCAGGCTGTT CATTACAGCA GTGTCCTTGA AGCCGCCGAG
CAGATGGGGA TCATCCCCAA TGTTGCCGGT AAAGTCAGCA AGATTAATGT AAGCATCGGC
CAGCGTGTGG AAAAGGGAGA TGTGTTGTTC CAACTGGACA GCACGGATCT GGAGTTGCAG
GTAAAGCAGG CTACTGCCAA TTATAATGCA GCCGCAGCTT CCTATAATCA TAATAAAGCT
TCCTATGACA GCCAAACCGC TGTTACCCCA GCCCAGATTG CCTATAATGA GGCGATGGAT
AACTATATCC GCATCAAGGC ACTCTATGAT GGCGGAGCGG TATCAGAGGT AGAGCTGAAC
AATGCCCAAG ACAAAGTGGA GATCACCCAT GCCCAACTGC AAACGGCTCA GAATTCAGCT
AAAGGAGCTG TCGATGCAGC CGCCGCTCAA ATGGCCAGCG CTCAGGCCGG ATTGGACATT
GCCCAAAAGA AATTGGACGA CTGTATTGTG AGAGCGCCGA TGGCTGGTGA AGTAGCGGCC
AAAACCATTG AGGTGGGTAT GATGGCTTCG CCCCAAGCAG CCGCCATGAC CTTGATCAAT
ACTCAACAGG TAAAAGTGCA TATCAATGTG ACCGAAACGA ATATTGCGAA GATAAAAGTC
GGCAGTACAG CTGAGGTTAA AGTGCAGGCT ATTAATGCCG CCGCCCAAGG TAAAGTGGTC
AATATCGCTC CTGCCTCAGA TGCTAAAACC GGCATGTTCC AAATCGAAAT TCTGCTTGAG
AATCCGGATA GCCTGTTTAA GGCGGGAATG ATCTGTGATG TAGAGCTGAG GTAG
|
|---|
| Protein sequence | MGVQLKSEEQ QQLKEQVKGK KSRKGIVLAI LTVIVLIAGC AGFYYFNENS RYFTTDNAKV
TAKMYTITPN ASGELLEWKV KEGDLVEKNQ VLGRQAVLPY ITSPIQGTVI KNNSIQGQAV
TPASQLAVIA DTDHLYIGVN IEETDIARIK VGQRVDVKLD AYPGVTFPGR VQEIDRATQT
YFSGASSFST SGTYAKVTQL IPVKVVIDNQ DNLPLTFGMN ATVKIHIKEE PVNTPSGAQG
GENTDSQQAV HYSSVLEAAE QMGIIPNVAG KVSKINVSIG QRVEKGDVLF QLDSTDLELQ
VKQATANYNA AAASYNHNKA SYDSQTAVTP AQIAYNEAMD NYIRIKALYD GGAVSEVELN
NAQDKVEITH AQLQTAQNSA KGAVDAAAAQ MASAQAGLDI AQKKLDDCIV RAPMAGEVAA
KTIEVGMMAS PQAAAMTLIN TQQVKVHINV TETNIAKIKV GSTAEVKVQA INAAAQGKVV
NIAPASDAKT GMFQIEILLE NPDSLFKAGM ICDVELR
|
|---|
| |