Gene Dhaf_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2012 
Symbol 
ID7258981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand+ 
Start bp2163240 
End bp2164328 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content47% 
IMG OID643561905 
Producttransposase, IS605 OrfB family 
Protein accessionYP_002458485 
Protein GI219668050 
COG category[L] Replication, recombination and repair 
COG ID[COG0675] Transposase and inactivated derivatives 
TIGRFAM ID[TIGR01766] transposase, IS605 OrfB family, central region 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.27721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCAAATGG TCTATCGCTA TGAGGTCTAT CCCTCTCGCG AACAAGAACA AAAGCTGTTT 
CATACCCTGA AGCTTTGCCG CAAACTCTAC AACCACGCCC TGAACGAACG GCAGGTAACT 
TACAAGGAAA CTGGTCATGG CCTAACCTAT AACCAGCAGC AGAATGCCTT ACCGGCATTC 
GTGAAAGCCC ATCCCGAGTA CAGCCAAGTT CACAGTCAAG TTCTCCAAGA TGTTCTACGC 
CGCTTAGATA GCGCTTATCA GCATTTCTTT GCCAAGGAAG CCGGGTATCC CCGTTTCAAA 
AACCGCGATC ACTATTCATC ATTGACTTAC CCTCAAGTCG ATAACGTGAA AAGAACCTTC 
GGTAGAGCAG GTTATATTTA TTTGTCCAAA CTAGGTTTTG TGAAGATGGA GACTCACCGG 
AAATTTCCGG TGGAAGCGAT AAAACGTGTC AATATCAAAT ATCATGGAGG AAAATGGTTC 
GCCAATCTTA CTGCTGAGAT TCCGGATGTT GCCCCCGTTG AAAATCCCAG CCAAGCTGTG 
GGGATCGATG TGGGCTTGAA TCATTTTGCT GTGCTTTCTG ACGAAAAGGT GATTGATAAC 
CCGAAGTATT ATCGTAAGAT GGAGAAAAAA CTGGCTAAAG CCCAGCGGAG GCTTTCCCGC 
AAAAGGAAAG GTTCACACAA CCGAGGGAAA GCCAAGGTAA AAGTAGCTAA AATACATGCA 
AAAATAGCGA ATCAGCGCAA GGACTTTCTC CATCAAGCAA GCGTTAGAGT GGTCAGAAGC 
TATGATCTTA TCGTCATGGA AGATCTCAAG GTACACAACA TGGTTCGGAA TCGGCGGTTA 
GCCAAAAGTA TTCATGATGC GGGCTGGGGT CAGTTCAGAA ATTACATCCG GTATAAATGT 
GAACGCCAAG GAAAACAGTT CATCCTGGTT GACCCCAAGG GCACATCACA GAGCTGCTTA 
TGTGGAGAGT CAGTCCCCAA AGACTTAAGC GTCAGGGTCC ATGAGTGCCC GTCCTGTGGA 
TTAGTGATGG ATCGTGACTT GGTAAGCTCC AAGCTCATCC TGGCCCGTGG TCTGAGTAAA 
ATAGCCTAA
 
Protein sequence
MQMVYRYEVY PSREQEQKLF HTLKLCRKLY NHALNERQVT YKETGHGLTY NQQQNALPAF 
VKAHPEYSQV HSQVLQDVLR RLDSAYQHFF AKEAGYPRFK NRDHYSSLTY PQVDNVKRTF 
GRAGYIYLSK LGFVKMETHR KFPVEAIKRV NIKYHGGKWF ANLTAEIPDV APVENPSQAV 
GIDVGLNHFA VLSDEKVIDN PKYYRKMEKK LAKAQRRLSR KRKGSHNRGK AKVKVAKIHA 
KIANQRKDFL HQASVRVVRS YDLIVMEDLK VHNMVRNRRL AKSIHDAGWG QFRNYIRYKC 
ERQGKQFILV DPKGTSQSCL CGESVPKDLS VRVHECPSCG LVMDRDLVSS KLILARGLSK 
IA