| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1523 |
|---|
| Symbol | |
|---|
| ID | 7258492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 1623452 |
|---|
| End bp | 1624663 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 643561431 |
|---|
| Product | isocitrate dehydrogenase |
|---|
| Protein accession | YP_002458011 |
|---|
| Protein GI | 219667576 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0538] Isocitrate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00127] isocitrate dehydrogenase, NADP-dependent, eukaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.030562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA TTCAAATGAA TGTCCCCCTG GTGGAAATGG ACGGAGATGA AATGACCCGG
ATTATCTGGG ACTATATCAA GGAAATCCTG CTTTATCCCT ATATTGAATT GAAGACCGAG
TATTATGATC TGGGTCTGCA GAAACGGGAT GAAACCGATG ACCAGATCAC CGTTGATGCA
GCCTTGGCCA CCAAAAAATA TGGGGTAGCG GTTAAATGTG CGACGATTAC ACCCAATGCC
CAGCGTGTTG AGGAATACAA TCTGAAGCAA ATGTGGAAAA GCCCCAATGG AACGATTCGG
GCCTTGCTCG ACGGAACGGT CTTTCGCGCT CCCGTCTTGG TAGAAGGGAT CAAGCCTTTG
GTCACCACCT GGAAGAAACC GATTACCATC GCTCGTCATG CCTATGGCGA TATCTATAAA
AATGTGGAGT ATCGGGTGGG TGGTCCCGGC AAGGCGGAGC TGGTTTTCTC AGGTGAACAT
GGGGAGGAAT CCCGTCAAAC CATCTGTAAC TTTGAAGGCA AGGGAATTCT CATGGGCATG
CATAACCTTG ATAGCTCCAT CGAGAGCTTT GCCCGAGCGT GCTTTAATTA TGCCCTCGAT
GTAAAACAAG ACGTGTGGTT TGCTACCAAG GACACGGTCT CCAAGCAATA TGATCATACC
TTTAAAGATA TTTTCCAGGA AGTTTATGAC AAGGAATATA AGGAACGCTT TGCAGCGGCT
CAGCTTGAAT ACTTCTATAC TCTTATTGAC GATGCTGTGG CTCGGGTTAT TCGCTCTGAA
GGAGGCTATA TCTGGGCTTG TAAGAACTAT GACGGGGATG TCATGTCGGA CATGGTAGCG
ACTGCTTTCG GAAGCTTGGC GATGATGACT TCGGTATTGG TTTCGCCCGA AGGGAATTTC
GAATATGAGG CGGCCCATGG TACGGTAACC CGTCACTATT ATCAACATCT TAAGGGTGAA
GAGACATCCA CCAACCCCAT TGCGACGATT TTTGCCTGGA CAGGCGCCCT TAAGAAACGG
GGAGAGCTGG ATGGTTTGCC GGATTTAGCC GACTTTGCCG CTCAGTTGGA GGAAGCCTCA
TTAAAGACCA TCGAAGCCGG AATTATGACC AAGGATCTGG CTTTGATCTC GGAACTGCCC
AATATCAAAA CCGTCAACAC CAAGGATTTC CTCGAAGAAA TTAAGAAAAC TCTCGATACG
CTCCGCCCAT AG
|
|---|
| Protein sequence | MTKIQMNVPL VEMDGDEMTR IIWDYIKEIL LYPYIELKTE YYDLGLQKRD ETDDQITVDA
ALATKKYGVA VKCATITPNA QRVEEYNLKQ MWKSPNGTIR ALLDGTVFRA PVLVEGIKPL
VTTWKKPITI ARHAYGDIYK NVEYRVGGPG KAELVFSGEH GEESRQTICN FEGKGILMGM
HNLDSSIESF ARACFNYALD VKQDVWFATK DTVSKQYDHT FKDIFQEVYD KEYKERFAAA
QLEYFYTLID DAVARVIRSE GGYIWACKNY DGDVMSDMVA TAFGSLAMMT SVLVSPEGNF
EYEAAHGTVT RHYYQHLKGE ETSTNPIATI FAWTGALKKR GELDGLPDLA DFAAQLEEAS
LKTIEAGIMT KDLALISELP NIKTVNTKDF LEEIKKTLDT LRP
|
|---|
| |