| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1466 |
|---|
| Symbol | |
|---|
| ID | 7258435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 1554980 |
|---|
| End bp | 1558258 |
|---|
| Gene Length | 3279 bp |
|---|
| Protein Length | 1092 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643561375 |
|---|
| Product | phage tail tape measure protein, TP901 family |
|---|
| Protein accession | YP_002457955 |
|---|
| Protein GI | 219667520 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5283] Phage-related tail protein |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGATG ATTTGGAAAA ACGAATAACA GCTAAAATGG TACTTGATAG CTCAGGTTTT
AATAGTAGCA TCCAAGGTGT AAATCAGCAG TTAAGGCTTG CTCAATCAGA ACTTAAGGCC
AGTTCTGAGC AGCTAGGAGT ATTCGGAACA AATACTGAGC GATTAAAAGC GACTACGGAA
GGTTTAAGCA GACAGATTGA TTTGCAAAGG CAAAAGGTAG ATATTTATCA ATCCAGCATT
CAGAAGACCA CTGAGAAGCT ACAGAACAAT ATCAAGGCCA GAGATGAGCT TAAAAAGAAA
CTTGAAGAGG CCACAGCGAA ATACAATGAA AGCATAAAAT TGTACGGCAA AGAATCTGAA
GAAGCTAATA AGGCTAAAGA GTCTGTTGAT AAGCTAACTG AGGAATATAA GCAAAAACAG
AAACAAGTAG AGAATAATTC TAAAACCATC AATAACTATA CTGTCAAAAT GAATCAGGCC
GAAGAAGGCT TAGCCAAAAT GCAAGGCGAA CTTCAAAAAA CCAATGATGA GTTGGCAAAA
AGTGAAAACA AGTGGCTCAA TGCTGGAAAA GCTTTGGAGG AAACATCCCA GAAGTTAAAA
ACAACAGGTG AGAGCGTTGG TAATGTTGGG GGAGTAATTC TCAAGGCTAC GGCTCCATTA
GTAGGATTGG GAGCGGCATC ATTAAAATTT GGGATAGAAT TTGAGTCTGC TTTTGCCGGA
GTCAAAAAGA CAGTGACTGC GACAGAGGAA CAATTAGCTG GATTAAGTCA AGGTATTCGA
GACTTATCAA AGCAGATGCC ACAAACGGCC AGTGAAATAG CAGGAGTGGC AGAAGCAGCA
GGACAGTTAG GGATTAAAAC CGAGAGTATC CTTGGATTTA CTAAAACTAT GGTGATGCTT
GGTGATACAA CCAATCTTAC ATCTGAGCAA GCAGCCACTG ATTTGGCAAG ATTAGCTAAT
ATTACCCAAA TGCCGCAAAC TCAATTTGAT AGGCTAGGGT CAAGCATTGT CGCACTTGGG
AACACAATGG CAACCACTGA ATCTGAGATT GTGTCTATGT CTTTGAGATT AGCGGCACAG
GGTAAACAAG TTGGAATGTC AGAAGCTGAA ATAGCTGCAT TAGCTGGAAC TATGTCCAGT
TTAGGTATAG AGGCAGAAGC TGGTGGTACA GCCATGACCA CAACACTCAA AAAGATACAG
ACAGCCGTTG CTGAAGGTGG AAGCGATCTG AAAGCCTTTG CAGATGTAGC AAGGATGTCT
AGTCAAGATT TTGCTAATTT GTTTAATGAA GATGCGGTTT CCGCTTTAGA TGCTTTTGTC
AAAGGTCTGG CTGGCTCAAG TGCAGAAGGC AAAAACTTAA CAACAATCTT ATCTGATTTG
GGTATTACTG GAATTCGCGA ATCGGATACT TTACTTCGTA TGGCTGGAGC GTCGGAGTTG
TTATCTTCTG CAGTAGAAAC CTCTACTCAA GCATGGGAAG AAAATGTTGC CTTAAGCAAT
GAAGCAGAGC AAAGATATCA GACCACAGGG TCCAGGCTTC TAATGCTTAA GAACCAGTTT
ATTGATGTAG GAATTAAATT AGGAGAAGTT CTAATTCCTT ATGTTGAGAC AGCTGCCTTA
AAGGTTGGAG AATTTGCCGA TTGGTTAGGT CAATTAGATA AAAGTACACT GGACACAACA
ACTAAAATTG TTGGCTTAAC AGTTGCCTTT GGGGGCATTC TCAAAATCGG TGGTGGAGCC
ATTAGTACAG TCGGAAGTAT TGCAGGGGGC TTAGGCAAAT TAAGTACAGC TCTTGGTGGA
GCAAAACTTG CTACTGCCGG TATAGGTACG GCTGCAAGTG TAGCTGGTGG GGTAAGTGGC
TTAGGGGCTT TAACGGCTGG TTTAGGTAGT GCAGCAGTTG CAGTGGCCCC TTTTGTGTTG
GCTGCTGGTG GCATTGCTGC AGTGGGTTAT GGCATAAATA AGAGTATGTC ACAAGAGGCA
GTTCCAGCAG TTGATCTTTT TGCAGATCAT GTGGAAATGA CTGCTGAACA AGTTGAATTA
GCAAGTCAAA GCATGGGTGC TGTAGTGGAG ACCACAACAA CCCAAATCAC TGAGGGAACC
AAGGAAGCGG TAGGAGCCTA TTTAGAATTA GATAATCAGG CCACTGAGAC CCTATCTAAT
CTATATATCA ATAGCACAAC CATAACTTCA CAAATTGCTG ATGACATGGT TGGTCAATAC
AGTTCGATGA CATCTCAGAT CAAGGTTGGG TTAGATAAAC ACCATCAACA GCTTCTTTCT
GACATGGAAC TATTTTTCAC TAATTCGCGC ACTTTGAGTG ATGCTGAAGA AAAAGAGGTT
CTTGCTAAAT TACAAAATGA CAATAACGCT AAAAAAGCTG AGATAGACAA TTACACCAAA
CAAATTCAAG AAATTCTCAT TAAAGCCAGT GAGGATAAAA GAGCTTTGAC TTTAGAAGAG
CAGCAAGAGA TCAATGAAAT TCAAGAGAAA ATGAGAGTCA ATGCCGTTAA ATCTCTATCT
GATAGTGAGG TAGAGTCAAA GGTTATCTTG GAACGGTTAA AGGAGTATAG TACAAGAATC
ACAGCTGAAC AAGCATCTGA AGTTATTGCT AATGCTGAAC GGCAGAGAAA AGAGGCGGTA
GATAAGGCTG AGCAGCAGTA TCAGGAAACT GTTAAAAATA TTATCAGGAT GAGAGACGAG
ACAGGGGTAA TTAGTGCAGA TCAAGCGGAT AGGCTTATTA AGGATGCAAC AAGGCAAAAA
AATGAGGGTA TTGTTAAGGC CCAGGAATTA AAAGATGGTG TGGTTGAAAA GATTCGTTCA
ATGAATAGAG ATATTTTAAA TGATATTAAT ATTACAGATG GCTCTATCAA AAATGGTTGG
AATAAGCTAA AAGACTGGTT TGGTAATAAT CCTATTACTC GTTGGGTTAG GACACAGATG
TCAGGAGAAG ATAACCTTGA TATTGGGCAG AATTGGGCTG GAACAAGCAG TTGGCGTGGG
GGTTTAACGA CGTTACATGA GCGGGGCTGG GAAATTTTTG ACCTCCCGAA AGGGACAAGG
GTTTATCCTC ATGAAGCCAG TGTAGAGTTA GTTAATAAAA TGGCTCAGAG TTTTGCTAGT
CAAAGTAGGG GAGGGTTCGG TTTAGGTAAA GTTGAGGTAA ATCTAAATGT TCATGGTAAT
CTTGATAAGA GCATTTTGCC ACAAGTTGAG AGAGTTTTAG AAAGTTCATC TCAAAAGATA
GTAAAAGAAC TTAATAAAAT GGGAGTTCGC ATAAGATAA
|
|---|
| Protein sequence | MADDLEKRIT AKMVLDSSGF NSSIQGVNQQ LRLAQSELKA SSEQLGVFGT NTERLKATTE
GLSRQIDLQR QKVDIYQSSI QKTTEKLQNN IKARDELKKK LEEATAKYNE SIKLYGKESE
EANKAKESVD KLTEEYKQKQ KQVENNSKTI NNYTVKMNQA EEGLAKMQGE LQKTNDELAK
SENKWLNAGK ALEETSQKLK TTGESVGNVG GVILKATAPL VGLGAASLKF GIEFESAFAG
VKKTVTATEE QLAGLSQGIR DLSKQMPQTA SEIAGVAEAA GQLGIKTESI LGFTKTMVML
GDTTNLTSEQ AATDLARLAN ITQMPQTQFD RLGSSIVALG NTMATTESEI VSMSLRLAAQ
GKQVGMSEAE IAALAGTMSS LGIEAEAGGT AMTTTLKKIQ TAVAEGGSDL KAFADVARMS
SQDFANLFNE DAVSALDAFV KGLAGSSAEG KNLTTILSDL GITGIRESDT LLRMAGASEL
LSSAVETSTQ AWEENVALSN EAEQRYQTTG SRLLMLKNQF IDVGIKLGEV LIPYVETAAL
KVGEFADWLG QLDKSTLDTT TKIVGLTVAF GGILKIGGGA ISTVGSIAGG LGKLSTALGG
AKLATAGIGT AASVAGGVSG LGALTAGLGS AAVAVAPFVL AAGGIAAVGY GINKSMSQEA
VPAVDLFADH VEMTAEQVEL ASQSMGAVVE TTTTQITEGT KEAVGAYLEL DNQATETLSN
LYINSTTITS QIADDMVGQY SSMTSQIKVG LDKHHQQLLS DMELFFTNSR TLSDAEEKEV
LAKLQNDNNA KKAEIDNYTK QIQEILIKAS EDKRALTLEE QQEINEIQEK MRVNAVKSLS
DSEVESKVIL ERLKEYSTRI TAEQASEVIA NAERQRKEAV DKAEQQYQET VKNIIRMRDE
TGVISADQAD RLIKDATRQK NEGIVKAQEL KDGVVEKIRS MNRDILNDIN ITDGSIKNGW
NKLKDWFGNN PITRWVRTQM SGEDNLDIGQ NWAGTSSWRG GLTTLHERGW EIFDLPKGTR
VYPHEASVEL VNKMAQSFAS QSRGGFGLGK VEVNLNVHGN LDKSILPQVE RVLESSSQKI
VKELNKMGVR IR
|
|---|
| |