Gene Dhaf_1380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_1380 
Symbol 
ID7258350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand+ 
Start bp1485619 
End bp1486263 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content43% 
IMG OID643561292 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002457872 
Protein GI219667437 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.000685689 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACGCA ATAAGTATCC TGAAGTAACG ATAAACCGCA TTCTCGATAC AGCTATGAAA 
TTGTTCATGT CCAAAGGATA TGAGCATACG ACGATCCAGG ATATCATCGA TGGATTGGGA 
GATTTGAGCA AGGGCGCTAT TTATCATCAC TTCAATTCAA AAGAAGAAAT CATGGATGCG 
GTGAATAAAA GATTAGCTGA GCAGGGGATA GCCGATATAA AAACAATTGC TCACGAGCGC 
AGTCTATCCG GGTTGGATAA ACTTTGCAAG ATGCTTGTGT TTTCTATCCA ATCGGCCCAA 
CACGAGGCTC TCGATCAGAC CGTACCGCCG TTTCTTAGAA ATCCTCAGTT ATTGGCTCTT 
CATATGCGTG ATACTATGGG CTCCGCAGCC GACCTGCTTA CAGGTGTTAT TGAGGAAGGT 
ATTAGAGACG GTTCTATTCA TACAGCTCAA CCCCGTCAGC TTGCCCAGAT GATTCTCTTG 
TTTTTTAACG TTTGGTTTAA CCCGTGGATG TATTCCTGGA CTCCCAATGA GTTAAAGGAT 
ATCATTTCCT TTGCAAGAAA TGTATTTGAA GAAATAGGGG TCCCTATAGT TACAGAAGAG 
GTTCTTCAAT CCATTGGCGA ACTCCATTCG CTTTCCCAAA AATAG
 
Protein sequence
MARNKYPEVT INRILDTAMK LFMSKGYEHT TIQDIIDGLG DLSKGAIYHH FNSKEEIMDA 
VNKRLAEQGI ADIKTIAHER SLSGLDKLCK MLVFSIQSAQ HEALDQTVPP FLRNPQLLAL 
HMRDTMGSAA DLLTGVIEEG IRDGSIHTAQ PRQLAQMILL FFNVWFNPWM YSWTPNELKD 
IISFARNVFE EIGVPIVTEE VLQSIGELHS LSQK