| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1326 |
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| Symbol | |
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| ID | 7258296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | - |
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| Start bp | 1432426 |
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| End bp | 1434048 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 643561238 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_002457818 |
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| Protein GI | 219667383 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00000101296 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATCAC CGGAATTTAT TGTACGCATT GATTTTGTCG ATCGCCCCGG TTTAGGTTAT
GACATATTTC AGCGCTTTGA AGATCATAAC GCTGATAAAA TCGTCATGGA AGTCTCTCAT
GGGCAGCAAA TGATGATTAA ATTTCGTTCT CCTGATCAGG AGGGATCGGA GACTCTCATC
CGGGACCTCC TTACCGTTCA GGGTGTCGTA TCAGTAACTC TTGTTGATTA CATGCCTTAT
GAACGGCGGG AGCAGGAATT AAAAACGATT CTCGACTTAG TAAGCGAAGG AATCATCGCC
GTCAATACAA ACCATAAAGT GACTCATATT AATGAAGTTG CGGCACAAAT TTTTCATACG
ACCCCGGAGG AGGCTTTGAA CCAAGATGCG GAACTCTTAT TTGAAGCAGA TGCTCCAATT
TTCGAAACCT TAAAAACAGG AATTCCTTAT AGCTTAAAAG AGCGCAAGAT TCGAAAAAAC
CAGAAGCTCA TACACTTTTT GACAAGTGGT GTCCCCATCC TCAATAAGCG AGGACAAATC
ATTGGGGGAG TCATGACCAT CAAAGATTTT CGTCAAGTGG AAGAACTCCT CTCCAAGGTT
GAACGTAAGC CTCAGTCTAT AAACTTTGAT AGTATCATCT ATGAGAGCCG GCGTATGCGG
GATCTCATTG AGACCGCCAA AACAGTAGCC CGGGGAACCT CCACCATACT CCTGCGGGGA
GAAAGCGGCA CAGGAAAGGA ACTGTTCGCC AAAGCTATTC ATGCCGAAAG TCCGCGTTCC
CGACAAGCCT TCATTCCTAT TAATTGTGCG GCTTTACCGG ATACCTTGTT GGAGAGTGAA
CTCTTTGGTT ACGAGGAAGG CTCTTTTACC GGAGCAACTA AAGGAGGGAA GAAAGGGCTT
TTCGAGCAGG CTCACGGGGG CACCCTTTTC CTTGATGAGA TCGGGGAAAT CACGCCTCAG
GTTCAGGTGC GCTTGCTTAG AGTACTGCAG GAAGGAACGA TTCGCCGTAT CGGAGGTTCG
AAAGAGATCC CTGTGGATGT ACGAATCATT GCCGCCACTC ACCGCAATCT CGAAGAGTTG
ATTGATAAAG GACAGTTCAG GGAGGATCTT TATTATCGCC TCAATGTGAT TCCCCTGCAT
ATTCCCTCAT TGCGGGAGAG ACCTGAAGAT ATCCCTTTGA TCGCCCAAGT CTTAACCCGA
AAGATTGCCA GAAAGCTTGG CAAATCCGAA GTGCACCTTA CCAAGGAAAG CGCGGACCTG
CTCAGGGCTC AAAAATGGCC CGGCAATGTT CGTCAACTGG AGAATCTCCT GGAGAGAATT
ATTAATTTAA ATTCGAACTC AGAGATCAAG CCCGATTCTT TCTATGAGTG GGGGGATTTG
ACACCGGCGC TTCCTGTGTC TGAATCGGAA AACACAGCTC ATCAACTTAT CATTCCTTTT
GGCGAACCCT GGCCTCCCCT TAAAGACATT GTTGCTCAAG TGGAACGTCA AGTTTTACTT
AAGGTGCTGG CGGAACATCC CTCTTCGCGT AAGGCGGGTA AAATACTGGG CGTCTCCAAT
ACAACAATTT TAAACAAAAT GAATTCCTAT GGACTTGGCA AGATGGATGA ACCCGAGGGA
TAA
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| Protein sequence | MESPEFIVRI DFVDRPGLGY DIFQRFEDHN ADKIVMEVSH GQQMMIKFRS PDQEGSETLI
RDLLTVQGVV SVTLVDYMPY ERREQELKTI LDLVSEGIIA VNTNHKVTHI NEVAAQIFHT
TPEEALNQDA ELLFEADAPI FETLKTGIPY SLKERKIRKN QKLIHFLTSG VPILNKRGQI
IGGVMTIKDF RQVEELLSKV ERKPQSINFD SIIYESRRMR DLIETAKTVA RGTSTILLRG
ESGTGKELFA KAIHAESPRS RQAFIPINCA ALPDTLLESE LFGYEEGSFT GATKGGKKGL
FEQAHGGTLF LDEIGEITPQ VQVRLLRVLQ EGTIRRIGGS KEIPVDVRII AATHRNLEEL
IDKGQFREDL YYRLNVIPLH IPSLRERPED IPLIAQVLTR KIARKLGKSE VHLTKESADL
LRAQKWPGNV RQLENLLERI INLNSNSEIK PDSFYEWGDL TPALPVSESE NTAHQLIIPF
GEPWPPLKDI VAQVERQVLL KVLAEHPSSR KAGKILGVSN TTILNKMNSY GLGKMDEPEG
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