Gene Dhaf_0618 details

Gene Information

• Locus tag: Dhaf_0618
• ID: 7257585
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 678399
• End bp: 680348
• Gene Length: 1950 bp
• Protein Length: 649 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 643560536
• Product: TRAP transporter, 4TM/12TM fusion protein
• Protein accession: YP_002457120
• Protein GI: 219666685
• COG category: [R] General function prediction only
• COG ID: [COG4666] TRAP-type uncharacterized transport system, fused permease components
• TIGRFAM ID: [TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); [TIGR02123] TRAP transporter, 4TM/12TM fusion protein

Plasmid Coverage information

• Num covering plasmid clones: 46
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAAAGG ATGAAAAAGA CTTGGACTCT ATGGACGAGA AAGATCTGGA AGCTTTAGCG 
GAAGACGGTA AACGCAGACC ACTGACCGGC GGCGTGGCTT TGGTTGTGGG CGCCCTGGCC 
GTGATCTGGA CCCTCTACAC CATTTACTCA ACCATTTTCG GTGTTCTGAA TGTGCTGGTT 
TACCGTGGGA TTCACTTGAC CTTTGCCCTG GCACTGGGTT TCGTCTTGTT CCCCCCATCC 
AAAAAGCTGG CCGGCCATAA GATTGCTTAT GCAATCGACC TCCTGCTGGC CCTTACCAGT 
GTAGCCTTAG GTATCTATGT ACTGAACAGC GCCGGCAGTT TTGCGGACCG GATCGGCATT 
CCCAACCGGG CGGATTTTAT CTTTGGAGCC ATTGCCGTGG TGCTGATCCT GGAATTAACC 
AGACGGGTCG TCGGAAAATC CATGACCATC GTGGCCGGAG TGTTCCTGGT CTATGCATTA 
TTCGGCAGGC ACTTGCCATC CTTTCTCGCC CATCCCGGCG TCGATGTCAA GATGCTCACC 
AGCACCCTGC TCATTTCCTT AGAGGGCATT TTCGGCGTGG CTTTGGGCGT GTCCGCCAAT 
CTGCTCCTGA TCTTTATCGT CGTTGCCCAG TTTCTGGTGG GCACCGGAAC CGGCCAGTTT 
ATTATGGATC TCTCCAGCTC CCTGATTGGC TGGGCAAGGG GAGGGCCGGC CAAGATCGCC 
ATCATCAGCA GCGGCTTATT CGGCAGCATA TCCGGCAGTG CCGTGGCCAA TGTGCTCAGT 
ACCGGGGCGG TCACCATACC CATGATGAAG AAACTGGGCT ATAAGCCCCA TTTTGCCGGG 
GCGGTTGAAG CAGCGGCCTC GACGGGAGGA CAGATCATGC CCCCGGTCAT GGGCGCCGCC 
GCCTTTGTCA TGGCCGAAGT ATTGGGAGTA CCCTATGCCA AAGTATGTGT TTCCGCCGCT 
CTGCCCGCTA TTCTATATTA TGTGGCCTTA CTGATCATGG TGGATTTGGA AGCAGCCAGA 
ACCCAATTGC GCGGGATTCC CAAGGAAAAC CTGGTTCCTG TAAAAAAGAC CCTCAAGGAA 
GGCTGGTTCT ATATCATTCC CTTGGTTATT CTGATTTATC TAATCATGAC CGGCAGTTCT 
CCCCAAAGAG CGGGGGTCAT CACCATCGCT GCCAGCATCA TCATCAACCT TTTGAACTGG 
AAAAACCGCT TATCCCTGAA GCAGTATCTC CATATGCTAA AAGAAGGAAG CCTGGGTTGC 
ATATTGATCG CTATGGCCTG TGCTACAGCC GGGATCATTA TGGGCTGCGT CAATCTGACG 
GGGCTTGGGC CCAATTTCTC AGGCATCCTG GTATCTTTAG CTTCAGGCAA TCAACTGGCT 
TTGCTTCTCC TGACCATGGT GGCATCGATC ATCCTGGGTA TGGCACTGCC CACCTTGATC 
TGCTACATGA TTTTAGCCGT TCTCATCGCC CCGGCCCTGG TCAGCATGGG AGTAGAGCCC 
ATGGCCGCCC ATCTTTTCGT CCTGTATTTC GGAGTGATCA GCTTTGTCAC GCCCCCGGTG 
GCCCTGGCCG CCTATGCCGG TGCAGCCATT GCCAATGCCA ATGCCATGAA GACGGGCTGG 
ACCGCCGCTA AAATTGCCAC ATGCATGTTT GTGCTGCCCT TTATGTTCGT TTACAACCCA 
GAGCTCATCC TGATTCATGG TCTGAGTTGG AGCGTACTGC CCATCATCAT TACATCGGTG 
ATTGGCACCA CGGCCATTTG TATGGCAATC CAAGGTTATG CATTTACCCC AATCAGACAT 
TGGCCGGTGA GGGTGATCCT GTTTTTGGCG GGGATAAGCC TCATCTACCC GGGAATGTAT 
ACCGATCTGC TGGGAATAGC CTGTTTTGCC CTTATAGTCG GTGCAAACTA TCGGTTTAAG 
CAAAAAGACC GGGTTGTCTT AAGTGAATAG 

 

Protein sequence

MTKDEKDLDS MDEKDLEALA EDGKRRPLTG GVALVVGALA VIWTLYTIYS TIFGVLNVLV 
YRGIHLTFAL ALGFVLFPPS KKLAGHKIAY AIDLLLALTS VALGIYVLNS AGSFADRIGI 
PNRADFIFGA IAVVLILELT RRVVGKSMTI VAGVFLVYAL FGRHLPSFLA HPGVDVKMLT 
STLLISLEGI FGVALGVSAN LLLIFIVVAQ FLVGTGTGQF IMDLSSSLIG WARGGPAKIA 
IISSGLFGSI SGSAVANVLS TGAVTIPMMK KLGYKPHFAG AVEAAASTGG QIMPPVMGAA 
AFVMAEVLGV PYAKVCVSAA LPAILYYVAL LIMVDLEAAR TQLRGIPKEN LVPVKKTLKE 
GWFYIIPLVI LIYLIMTGSS PQRAGVITIA ASIIINLLNW KNRLSLKQYL HMLKEGSLGC 
ILIAMACATA GIIMGCVNLT GLGPNFSGIL VSLASGNQLA LLLLTMVASI ILGMALPTLI 
CYMILAVLIA PALVSMGVEP MAAHLFVLYF GVISFVTPPV ALAAYAGAAI ANANAMKTGW 
TAAKIATCMF VLPFMFVYNP ELILIHGLSW SVLPIIITSV IGTTAICMAI QGYAFTPIRH 
WPVRVILFLA GISLIYPGMY TDLLGIACFA LIVGANYRFK QKDRVVLSE