Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_0414 |
Symbol | rpoB |
ID | 7257381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | + |
Start bp | 457178 |
End bp | 460525 |
Gene Length | 3348 bp |
Protein Length | 1115 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 643560333 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002456917 |
Protein GI | 219666482 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0178041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCTATC CTGTTAAGGT AGGGACGCGG GAACGCTGGA GTTATTCCAG AATTCGAGAA GTTCTCGACA TGCCAAATCT AATCGAAATT CAGCAAAACT CTTATCAGTG GTTTCTTGAT GAAGGGTTAA GGGAAATGTT CAGGGATATT TCCCCCATTC AAGATTTCAC AGGCAACCTT GTATTGGAAT TTATCGACTA TAGTTTAGGA GAGCCTAAAT ACGAGGTGGA AGAGTGTAAG GAACGCGACG TAACGTATGC GGCACCTCTG CGGGTTAAAG TTCGTCTCAT TAATAAAGAG ACAGGGGAAG TGAAGGAACA AGAGGTCTTC ATGGGTGATT TTCCCTTGAT GACCACCAAA GGAACCTTCA TTATTAACGG AGCAGAACGG GTTATCGTCA GTCAGCTGGT TCGTTCTCCC GGTGTTTACT ATTCCGAAAG CATCGACCCC AGCGGGAAGA AAGTCTTCGG AGCGACGGTT ATTCCTAACC GTGGAGCTTG GTTAGAGTTT GAAACGGACG TTAATGATAA TATTTTTGTT CGTGTGGATA GAACTCGTAA ACTTCCAGCC ACCGTATTGA TTCGGGCTTT GGGTTATGCT ACCAATGGGC AGATTGCCGA GCTTTTCGAT GATAACGAGC ATATCCGTAT TACCCTGGAG CGGGATAATA CGGAGTCGGC AGAGGAAGCC CTGGTGGAAA TCTACAAGCG TCTGCGCCCG GGAGAACCTC CCACTGTGGA CAGTGCGCGC TCTCTATTAG AAGCATTATT TTTTGATCCC AAGCGTTATG ATCTGGCTAA AGTAGGCCGC TATAAACTCA ATAAAAAGCT GAAGCTCAGT GTTCCTACTG ATGTGCATCA TTTGACCAAG GAAGATATCG TGGCTTCCCT GCGGCAAATG CTGACCCTGA TGAGCGGAGA AGGACATAAG GATGATATCG ATCATCTGGG CAATCGCCGC CTTCGTTCCG TGGGAGAGCT GCTGCAGAAC CAATTCCGGA TCGGTTTATC CCGTATGGAG CGGGTGGTCC GGGAACGGAT GACTATTCAG GATGTGGATG TGATCACGCC TCAGGTTCTG ATCAATATCC GTCCTGTAGT GGCTGCCATT AAGGAATTCT TCGGCAGCAG TCAGTTGTCC CAATTTATGG ACCAAACCAA TCCTTTGGCT GAACTGACCC ATAAGCGCCG TCTCAGTGCC CTGGGACCCG GTGGTCTAAG CCGTGAACGG GCCGGCTTTG AGGTGCGTGA CGTTCACCAC TCTCACTATG GCCGGATGTG CCCCATCGAG ACTCCTGAAG GTCCCAACAT CGGTTTGATC GGCTCCTTAA GCACCTATGG CCGGATTAAT CCCTATGGAT TTATTGAAGC TCCTTACCGT AAAGTGAACA ATGGTCAGGT TACGGATCAG ATCGATTACC TGACCGCCGA CGAAGAAGAG AAATTCGTCG TAGCTCAGGC CAATGCTCCT TTGACGGATG ACGGGCATTT CATTGAAGAG AAGATCGATG GACGTCATGG TCCCGACTTC GTTTTGGTGG CGCCGGAGCG GATTGACTAC ATGGACGTTT CTCCGAAACA AATGGTATCC ATCGCGACGG CCTTAATTCC CTTCCTGGAG CACGACGACG CCAACCGTGC TTTGATGGGC GCTAACATGC AGCGGCAGGC TGTGCCCCTT TTGCGCACCG ATGCTCCCTA TGTGGGAACA GGGATGGAGT ACAAAGCGGC CAAGGATTCC GGAGTCTGTG TCTTAGCTTC TAAAGACGGC ACTGTGGAGC GGGCTACAGC CGAGGATATC ATCATCCGTC ATGACGACGG AACCCTGGAG AAGCATAAAC TCTTAAAGTA CCTGCGCTCC AACCAGGGAA CCTGTATCAA TCAACGTCCC ATCGTGATGA AGAATGAGCG GGTGGAAGCA GGTCAGATCA TCGCTGACGG TCCATCTACG GATCATGGTG AGCTGGCTCT TGGCCGCAAC GTTTTGATCG CTTTTATGAC CTGGGAAGGT TATAACTATG AGGATGCTAT TCTGATCAGC GAAAAGCTGG TTAAGGAAGA TTACTATACC TCCATCCACA TTGAAGAGTA TGAAGCCGAT GCCCGGGACA CTAAACTGGG ACCGGAAGAA ATTACCCGGG ATATTCCTAA CGTCGGGGAA GATGTGCTGA AAGATTTGGA TGAGCGGGGA ATTATCCGCA TCGGTGCGGA AGTCAGCACC GGGGATATCC TGGTGGGTAA AGTTACTCCG AAAGGTGAAA CGGAGCTTAC CGCGGAAGAG CGCCTTCTCA GAGCCATTTT CGGCGAAAAA GCCCGGGAAG TGCGGGATAC CTCTCTGCGT GTACCTCACG GGGAAGCCGG CAAGATCGTG GATGTCAAAG TCTTTACCCG GGAAAACGGG GATGAGCTGG CCCCTGGAGT CAACGAGCTG GTACGGGTCT ATATCGCTCA AAAACGGAAA ATCTCCGTTG GGGATAAAAT GGCCGGCCGC CACGGCAACA AAGGGGTTAT CTCCCGCATT ATGAAGCAGG AAGATATGCC TTTCCTGCCT GACGGAACTC CGGTGGAAAT CGTCTTGAAC CCCCTGGGTG TTCCTTCCCG GATGAACATC GGTCAGGTTA TGGAAACCCA TTTAGGCTGG GCGGCGAAAG CTCTCGGACT TCGTTTGGCC ACACCGGTCT TTGACGGAGC ACAGGAAGAG GATGTCTTTG CCACCCTTAG AAAAGCCGGA CTTCCAGAGA CAGGCAAAAC CGTACTTTAC GACGGACGGA CGGGAGATCC CTTTGATAAT AAGATTACCG TCGGCTATAT GTACTTCCTG AAGCTCCACC ATCTGGTGGA CGACAAGATT CATGCCCGGT CCACCGGACC CTACAGCTTG GTTACACAGC AGCCCTTGGG CGGTAAAGCC CAATTCGGCG GTCAGCGTTT CGGGGAGATG GAGGTTTGGG CTCTGGAGGC TTATGGAGCA GCCTATACTC TCCAGGAGAT TCTTACCGTC AAGTCTGACG ATGTGGTGGG ACGGGTCAAG ACTTATGAAG CCATTGTTAA AGGTGAAAAC ATCCCTGAAC CGGGAGTTCC GGAATCTTTT AAGGTTCTCA TCAAAGAGTT GCAAAGCTTA GGGCTTGATG TCCGCGTGCT TTCTGAAAAC GACGAAGAAA TTGAAATCCG TGAAATCGAT GAGGATGTGA CCGAGACGGC GAAAGAGCTG GGCATCGATC TTCATGAAGA CCTCCCGGCG CCTGTCATCC ATGAAGCCGG TGAAGGTGAG GATGATGAGT ACTTCGAAGA GGACGAAGAA GCTGTTGATG ATGAGCCGAT GACCTTTGAT GATGACGATA TGGAATAG
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Protein sequence | MFYPVKVGTR ERWSYSRIRE VLDMPNLIEI QQNSYQWFLD EGLREMFRDI SPIQDFTGNL VLEFIDYSLG EPKYEVEECK ERDVTYAAPL RVKVRLINKE TGEVKEQEVF MGDFPLMTTK GTFIINGAER VIVSQLVRSP GVYYSESIDP SGKKVFGATV IPNRGAWLEF ETDVNDNIFV RVDRTRKLPA TVLIRALGYA TNGQIAELFD DNEHIRITLE RDNTESAEEA LVEIYKRLRP GEPPTVDSAR SLLEALFFDP KRYDLAKVGR YKLNKKLKLS VPTDVHHLTK EDIVASLRQM LTLMSGEGHK DDIDHLGNRR LRSVGELLQN QFRIGLSRME RVVRERMTIQ DVDVITPQVL INIRPVVAAI KEFFGSSQLS QFMDQTNPLA ELTHKRRLSA LGPGGLSRER AGFEVRDVHH SHYGRMCPIE TPEGPNIGLI GSLSTYGRIN PYGFIEAPYR KVNNGQVTDQ IDYLTADEEE KFVVAQANAP LTDDGHFIEE KIDGRHGPDF VLVAPERIDY MDVSPKQMVS IATALIPFLE HDDANRALMG ANMQRQAVPL LRTDAPYVGT GMEYKAAKDS GVCVLASKDG TVERATAEDI IIRHDDGTLE KHKLLKYLRS NQGTCINQRP IVMKNERVEA GQIIADGPST DHGELALGRN VLIAFMTWEG YNYEDAILIS EKLVKEDYYT SIHIEEYEAD ARDTKLGPEE ITRDIPNVGE DVLKDLDERG IIRIGAEVST GDILVGKVTP KGETELTAEE RLLRAIFGEK AREVRDTSLR VPHGEAGKIV DVKVFTRENG DELAPGVNEL VRVYIAQKRK ISVGDKMAGR HGNKGVISRI MKQEDMPFLP DGTPVEIVLN PLGVPSRMNI GQVMETHLGW AAKALGLRLA TPVFDGAQEE DVFATLRKAG LPETGKTVLY DGRTGDPFDN KITVGYMYFL KLHHLVDDKI HARSTGPYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEILTV KSDDVVGRVK TYEAIVKGEN IPEPGVPESF KVLIKELQSL GLDVRVLSEN DEEIEIREID EDVTETAKEL GIDLHEDLPA PVIHEAGEGE DDEYFEEDEE AVDDEPMTFD DDDME
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