| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0378 |
|---|
| Symbol | |
|---|
| ID | 7257343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 418914 |
|---|
| End bp | 421034 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643560295 |
|---|
| Product | penicillin-binding protein, 1A family |
|---|
| Protein accession | YP_002456881 |
|---|
| Protein GI | 219666446 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATT CCCCGGACCC TCAAGGGAAA TGGCAAGCTT ATCTTAGCAA GGCCTTAGCA
AAATGCCGCA CCTTTAAGTT CCCTGCTTTC TATAAAAAAC CTAAATTCTG GCGCAACCTG
GCCATCCTTT TTTTGTTCGT ACTGCTGTCC GGCCTGGGCG CCGGTTACTA TTGGATCTCC
ACCCTGGATG TAAGCAAGCT GGAAAGCCCC CTGGCCAAGC CCACCTATAT CTACGACCAG
GCAGGCAACA AGATCTCGCA GCTCTCTTCC TCCCGTATTG AGCCCGTAAC TCTGGAACAA
GTCCCTCAGC TTGCACAGCA GGCCATTATC GCTACCGAAG ATAAACGCTT CTATGAACAC
CAAGGTGTGG ATTTCCGCTC CATCCTGCGC GCCCTCATCC AGGACCTGAA AACCCGGAAT
TTCTCCGAGG GGGGCAGCAC TATCAGCCAA CAGCTGGCGA AAAATCTTTT TCTCACCTCA
GACAAGACCC TCAGCCGCAA GTTGAAGGAA GCCGGCTATG CCATTAAAAT TGAAGCCACC
CTCTCCAAGG AAGAGATTCT GGAAGCCTAC CTCAACCATA TCTATTTTGG GGAAGGCCGC
TGGGGACTTC AGGAAGCCGC CCGTTACTAT TTTGGCAAAA ATGCCGAAGA GCTGAACCTG
GAGGAATCCG CCCTTCTTGC CGGCATCCTC AAAGGCCCCA CCATCTACTC CCCTCTCCAA
GATAAGGAAC TGGCTCTCCA GCGCCGGAAC ATCGTCCTCG CCATGATGGC CGACCAGGGC
TATATTACCG CCAAGGAAGC CGCTCAGGCT ACTGCAGCGC CCATCGCCCT GCGCACCAAG
CCTTTAGATA ATTTATCCGG CAAATACGCC CCCTACGTGG ATTATGTCAT CGAAGAAGCT
ATCAACCGCT ATGGCTTTAC AGAAGATCAG ATTCTCACCC TTGGTCTGCA AATTCATACC
CAAATGGATG CCAAGGTTCA ACAAGCCGCC GAAACCGTCT ATAAAGATGA CCAATTCTTC
CCCCAAGGCC AGAGCGATCA AAAGGTCCAA AGCGGCATCG CCATTCTTGA CCAGCATACC
GGGGCTATCC GAGGTCTGGT GGGGTATCGG GGGGAAAGCG CTTTCCGCCA GTTTAACCAT
GCCTCCCAGC TCAAGCGCCA ACCCGGTTCC ATCATCAAAC CCCTGATGGT CTATGGCCCC
GCTTTAGAAA AAGGCTATCG CCCTGATGCC CTCCTCTATG ACGGTCCTCT GGATCTGGAC
GGTTATGCGC CAAAGGATTG GGACGGCCAA ACCCGGGGCT GGGTGACCAT GGAAGAGGCC
ATTCAGCAAT CCTGGAACAT CCCCGCTGTC TGGTTATTTG ATCAAATCGG CATCGACACC
GGAAAAGCCT TTGTGCAAAA AGCCGGCATC CCTTTAACTG AAAAGGATGC CCATTTAAGT
CTGGCTCTGG GTGGATTTGC AGAAGGAGTC TCTCCCCTGG AGATCGCCCA GGCCTATACC
GCCTTTGCCA ATCAAGGGCT CATGCACACA GCTCACGCCA TCACCAAAAT TACCACCGCC
GACGGACATG TCTTAGCCCA AATGCAGCCG GAAAGCGTCC AGGTCACAGA GCCTGATCAC
GCCTATACCA TGACCCTTCT TCTCCAAAAC GTCGTCCAGC AGGGAACCGC CCCTAAAGCC
GCTCTGGGCA GTCGTCCCGT AGCCGGAAAA ACCGGTTCTG TGGAGTTGCC GCCTACCCAA
GAGTTTGCAG GTATCAGCAA GGGGCAAAAA GATGTCTGGT TTGTCGGTTA CACGCCTGAG
CTGACCGCTG CCATCTGGAT GGGCTATGAT CAAACGGATC GGGATCATTA CCTCACCACC
TCCGGCGGCT CGGGGCCTGC CGTCGTCTTC CATGAAGTCC TCTCTTCAGC CCTCAAGGAC
ACCCCTATCA AACCTTTTGA GGTTCCCGCC GGGTATGTGA AGGATTGGAA TATCTGGCCC
GAAGGCTGGG ATGATCAGGA TGAATACGAC CAAAACAAGG ATGACGATAA AGATAAAAAG
GACAAAAAGG GTAAGAAGAA CAAGAAAGAC CCCAAAGATA AAAACGAGTT CTGGGACCTT
TTTCAGGATC TATGGAGCTA G
|
|---|
| Protein sequence | MNNSPDPQGK WQAYLSKALA KCRTFKFPAF YKKPKFWRNL AILFLFVLLS GLGAGYYWIS
TLDVSKLESP LAKPTYIYDQ AGNKISQLSS SRIEPVTLEQ VPQLAQQAII ATEDKRFYEH
QGVDFRSILR ALIQDLKTRN FSEGGSTISQ QLAKNLFLTS DKTLSRKLKE AGYAIKIEAT
LSKEEILEAY LNHIYFGEGR WGLQEAARYY FGKNAEELNL EESALLAGIL KGPTIYSPLQ
DKELALQRRN IVLAMMADQG YITAKEAAQA TAAPIALRTK PLDNLSGKYA PYVDYVIEEA
INRYGFTEDQ ILTLGLQIHT QMDAKVQQAA ETVYKDDQFF PQGQSDQKVQ SGIAILDQHT
GAIRGLVGYR GESAFRQFNH ASQLKRQPGS IIKPLMVYGP ALEKGYRPDA LLYDGPLDLD
GYAPKDWDGQ TRGWVTMEEA IQQSWNIPAV WLFDQIGIDT GKAFVQKAGI PLTEKDAHLS
LALGGFAEGV SPLEIAQAYT AFANQGLMHT AHAITKITTA DGHVLAQMQP ESVQVTEPDH
AYTMTLLLQN VVQQGTAPKA ALGSRPVAGK TGSVELPPTQ EFAGISKGQK DVWFVGYTPE
LTAAIWMGYD QTDRDHYLTT SGGSGPAVVF HEVLSSALKD TPIKPFEVPA GYVKDWNIWP
EGWDDQDEYD QNKDDDKDKK DKKGKKNKKD PKDKNEFWDL FQDLWS
|
|---|
| |