Gene Dhaf_0106 details

Gene Information

• Locus tag: Dhaf_0106
• ID: 7257055
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 110681
• End bp: 111283
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 643560009
• Product: RNA polymerase, sigma-24 subunit, ECF subfamily
• Protein accession: YP_002456611
• Protein GI: 219666176
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 73
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAA GTATCCTGGC AAAGGGGGGA GCGACCATAG TCACTCAAGT GGAAAAAAGA 
GAGTTGATTG GACTTGCTCA AAAGGATGAG ACATCCTTTA CGGAACTATA CAATGTTTAC 
TTTCCCCGGA TTAATAATTA TGTGCATTAT CGGGTGGCAG ATTATCATGA TGCCGAAGAT 
CTGGTCAGCC AAATCCTTGA GAAAGTGTTT ACCAAAAGTC ACTCTTACCA AGAGAACAAA 
GCTCCTTTTT CTGTCTGGCT TTTTCGCATT GCTCGTAACA CCATTACCGA TTACTATCGC 
AGCCGCAAGG GAGTACATAA TATTTCCCTT GATGGCTATA CAAGAGATAT CGTGGCCCGT 
GAGCCGGAAC CGGTAGAAAT TGTGGAATTA AATGAGCTCC AGCACCATCT CCTCAAGGCC 
ATTGCTTCTT TAAGCCAACG TGAGCAGGAG ATCATTGCGT TAAAGTTCTG GAGTGATTTA 
AGCAATCGTG AGATCGCCAA GCTTGTTGGC ATCAGCGAAA GCAATACAGG TGTCATCCTC 
TTCCGGGCCA TGCGGCAGCT GCGCCTAATC CTGGCAAGCC AAGGGATGTG TATCTATGAA 
TGA 

 

Protein sequence

MNKSILAKGG ATIVTQVEKR ELIGLAQKDE TSFTELYNVY FPRINNYVHY RVADYHDAED 
LVSQILEKVF TKSHSYQENK APFSVWLFRI ARNTITDYYR SRKGVHNISL DGYTRDIVAR 
EPEPVEIVEL NELQHHLLKA IASLSQREQE IIALKFWSDL SNREIAKLVG ISESNTGVIL 
FRAMRQLRLI LASQGMCIYE