Gene Dhaf_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_0002 
Symbol 
ID7256946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand+ 
Start bp1698 
End bp2801 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content43% 
IMG OID643559902 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_002456508 
Protein GI219666073 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.150547 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTT ATTGCTCCAA GGACTCCCTG ATTACGGGAG TGAATACTGT CCAAAAAGCA 
GTATCAAATA AAAACACCTT GCCTGTTCTG CAAGGAATTA TGATTAGAGC TGAAGGACAA 
TCCTTGATCT TCGAAGCCAC GGATTTAGAA ATAGGGATCC GCTGCGTCGT TCCGGCTCAG 
GTAGAAAAAG AGGGAGTTGT GGTTCTTCCT TCCCGGCTTT TTTCTGATTT AGTGCGCAAG 
CTGCCCGACG TTCTGATTGA ACTGGAGCTG CAAAACGATG TGATCAACAT TCATTACAAT 
GAATCGGATT TATCCCTCAG AGGCTATGAC CCGGAGGAAT TTCCCTTATT ACCGGATCTC 
TTTGATGCGG AAACCTTTAA CTTACCTGTC TCCATCTTTA AAACCATGAT TAAACAGACT 
ATTTTTGCCT GTTCTGCTGA AGAGAGCCGT CCTGTCTTTA CAGGCTGCCT GCTCCAGATC 
GAAGATGGAA GCTTACGTTT AATTGCTACA GATACCCATC GTCTGGCTTA CCGGATTGCC 
GAAATTTCTA ATCCTGAACA GATCAAGTTT CAGGGTATTA TTCCCGCCAA GACCTTAGGG 
GAAATTTATC GCTTGCTCAG GGATGAGGAT GAGAATTTAT TCATCCGCTT TAATCAAGCC 
CAAATCGTTT TTCAGTTTGG AGCTGTCCAT CTCCTCTCCC GTTTGATTGA AGGACAATTC 
CCCAATTATA AACAAGTTAT CCCCCAATCC TGCCAAACGA AGGTTTTATT ATCAGCGCGG 
CTTTTCCAGG ATTCTGTGGA AAGAGCTTCT TTGCTGGCCC GGGATGGGAG CCATACCAGT 
ATTATCAAAC TCTCAGTGGA TACAGAGAGA TTGTCCATTG ATCAGACCTC GGAATTAGGT 
AAGATATCCG AGCAGATGGA AGTAAAAAAA GAGGGCAATG ACGTCAAGAT TGCTTTTAAC 
TCCAAATTTT TATTGGATGT GCTTAAAATT ATTGATTCTG AAGAGATCGT TTTTGAATTG 
TCGGGTTCTT ACAGCCCGGG AATCATTCGT CCCGTCGACG ATCCCAACTA TCTCTATCTT 
GCTTTGCCTG TGCGGACGTC TTAA
 
Protein sequence
MKIYCSKDSL ITGVNTVQKA VSNKNTLPVL QGIMIRAEGQ SLIFEATDLE IGIRCVVPAQ 
VEKEGVVVLP SRLFSDLVRK LPDVLIELEL QNDVINIHYN ESDLSLRGYD PEEFPLLPDL 
FDAETFNLPV SIFKTMIKQT IFACSAEESR PVFTGCLLQI EDGSLRLIAT DTHRLAYRIA 
EISNPEQIKF QGIIPAKTLG EIYRLLRDED ENLFIRFNQA QIVFQFGAVH LLSRLIEGQF 
PNYKQVIPQS CQTKVLLSAR LFQDSVERAS LLARDGSHTS IIKLSVDTER LSIDQTSELG 
KISEQMEVKK EGNDVKIAFN SKFLLDVLKI IDSEEIVFEL SGSYSPGIIR PVDDPNYLYL 
ALPVRTS