| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_3095 |
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| Symbol | |
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| ID | 7175041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 3907229 |
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| End bp | 3908488 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643541632 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_002437500 |
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| Protein GI | 218888179 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 63 |
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| Fosmid unclonability p-value | 0.0493891 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCGC CGCATCCGTT TGAAATTTTC ATGCGCGAGG CCATCGCCCT TGCCCGGCGG
GGCCGCTGGC GCGCGGCGCC CAACCCCACG GTGGGCGCGG TACTGGTGCG CGACGGCCAG
GTGGTGGCGC GCGGTTACCA CACGGCCTGC GGCATGCCCC ATGCCGAGGT GGAATGCCTG
CGTGACGCGG CGGCCAATGG CGTGGACCCG GCAGCCTGCA CCCTGATGGT CACGCTGGAA
CCGTGCAACC ACCACGGCAA GACGCCCCCC TGCTCGCAGG CGGTGCTGGC GGCGGGCATC
CGCCACGTGG TGGTGGGCAT GGCCGACCCC AACCCGGTGG CCAGGGGCGG CGCGGAATTT
TTGCGCCAGC ACGGCGTGCG GGTGGATATG GGCGTGTGCG AGCAGGACTG CCGCGACCTG
GTGGCCGACT TCGTCACCTG GAAGAAAACG GACCTGCCCT ACGTCATCCT GAAGCTGGCC
AGCACGCTGG ACGGGCGCAT CGCCACCCGC GCGGGCCATT CGCAGTGGAT AAGCTGCGCG
GCCTCGCGCC GCCGGGTGCA CGCCATCCGC GCGGGCGCGG GCCATGCCGG GGGCGCGGTG
CTGGTGGGCG GCGGAACCCT GTTCGCCGAC AACCCGCTGC TGACCGCCCG CTGCGGTGAT
TTTTCCGATG CCTTTCCCGC CGCCCCCCAG GGGGGCTGCG CCGGTATTGA CGAAGCAGAC
GCCCCGCGCC GCCAGCCGCT GGCCGTGGCC GTCACCTCGC GCATGGACGA GGTGGCCGCG
CGGGCTGGCG ACCTTGCGCT GCTGCAACAG CGGGCGGCGG ATACCATTTT CTGGACCACG
GAGACGGCGG CGGCATCCCC GGCAGCCGAC ACGGTGCGCG CCATGGGCGT GCGGGTGTGG
GGCCTGCCTG CTGCCAGTGC TGCCCATGAA CATGGGGAAA CCGGGAAACC CGGTGAGACG
GGGGCCACCA GCGCTGTGGG GTTGGACCTG CGCGCGGGTC TGGCCCGGTT GCGTGCCGAG
GCCGGTTGCC TGTACGTGCT GTGCGAGGGC GGCGGGCAGT TGGGCCTGGC CCTGCTGGAA
GCCGGACTGG TGCACGAATT CGAACTGCAC CTGGCCCCCA AGGTGCTGGG CGACAACGCC
GCGCGGCCCC TGTTCGATGG TCGCGCGCCC CTGCGCATGG ACGACGCACT GGGCCTGCGC
GTGGCCGACA CCGCACCCAG CGGGGATGAC ATCATCGTGA CCTTGCGCCA GAAGGTGTAG
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| Protein sequence | MTAPHPFEIF MREAIALARR GRWRAAPNPT VGAVLVRDGQ VVARGYHTAC GMPHAEVECL
RDAAANGVDP AACTLMVTLE PCNHHGKTPP CSQAVLAAGI RHVVVGMADP NPVARGGAEF
LRQHGVRVDM GVCEQDCRDL VADFVTWKKT DLPYVILKLA STLDGRIATR AGHSQWISCA
ASRRRVHAIR AGAGHAGGAV LVGGGTLFAD NPLLTARCGD FSDAFPAAPQ GGCAGIDEAD
APRRQPLAVA VTSRMDEVAA RAGDLALLQQ RAADTIFWTT ETAAASPAAD TVRAMGVRVW
GLPAASAAHE HGETGKPGET GATSAVGLDL RAGLARLRAE AGCLYVLCEG GGQLGLALLE
AGLVHEFELH LAPKVLGDNA ARPLFDGRAP LRMDDALGLR VADTAPSGDD IIVTLRQKV
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