| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_3083 |
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| Symbol | |
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| ID | 7175029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3891763 |
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| End bp | 3894993 |
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| Gene Length | 3231 bp |
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| Protein Length | 1076 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643541620 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002437488 |
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| Protein GI | 218888167 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTGCGCG AACCTTCCGG TGTACACACC ATGCCCGGCA CCGCAGAATC GCATGCCGAA
CCGCATGCCG ATCCGGAACG CTCTGCCATG GCCGAGGCCA TGGCCAGCCC GAACGCCCCC
CGGCGGCCCG CGTTGTCGCC GCTGCCGCCT CCCCCCTGCG TGGCGGGCGA TGGCCTGTTC
GCCGGACTGC CGGACCTGGC CGCCATGCTC GGCAAGCCCG CTCCGGACGC GGTGCAGGAA
GAACCAGGCG CGCCGCCCGC GCCCGACACC TCCGGGGCGA TTTCCGCCAC AGATAGCACC
ACGCAGGATT CCCCGTCCGG CGCGTCTGCA TCGGGCCCGC GCGGACCTGA CCAGGCCTCA
GTCGGCAGGT TCTGGCCCCA TGGCGACCTG GCCGCGCAGT TCGGCACGGC GGGCATCGGC
GTGTGCGTGT TCGACCCGGC GGGCCAACTG CTGTACATGA ACGGTCGCAT GGCCGACCTG
CTGGGCTGCG GCCCGGAAGG CATTCCTTCG TTGTTCTGCG CCCGCCTGGT GGGGCTGGAA
GGCACGGCGG ACGTGCTGGC GCTGTTCCTG CGTGTGGCCT CCGGCCAGGA CGAGGGCGGC
AGCGTGCGCA AGCGCTTCCT GCGCGGCGAC GGCGGCACCA TGCTGGCCTC GGTTACCCTG
TACGCGGTGC ACGACGCCCT GGGCCTGCCG CTGCACGTGG TGCATCTGGT GCGCCCGCTG
GAACGCACGG AGCGGTCCGA AAGGGGCGGC GACCGGTCCG AGGCACTGGC CCGACGCCGT
TTCGACGACG TGCCCTTTCC CGTGGGCTGG TCCGCCACCG ACGGCGCCCA GACGCCCGGC
ACCGCCCGGC CCGACCGCTA TCGCGCCGCA CTGCACCTCA TTGCCCACGC CACCCTGCAC
GAGGCCGACC CCGACAGCCT GGGGGCGGCC TTCACGCGCA TCTTCCGTTC GCTGCTGCCG
GGCGAGCCGC CGGAACTGGT GGTCTACCCC GGCGACGGCA GCCGCACCGT GTATTCGTCC
GCCGAGGCTG CCGGGCGCAA GGATGCCGCG CCCCCGTGCG ACCTTGCGGC GCGGGTGTAC
CTGCGCGGCG AGACCGTGCG CGTGGACGCC GAAGAACTGC GCGAACTGGC CGAGCTTGGC
GAATGCCTGC TGCCCGATCC CGTGCCCGCC CATTGGCTGG GGGTGCCGCT GCGCACCCGC
ACCGGAGAGG TGCTGGGGGC CATGGTGTGC CAGGTGGCGG GCGGGGAAGA TGCCGAGCGG
GTCGGCCCCG GTACTCAGCC AGTTCAGCCC GATCAGGCAG AACGGGCAGA ACGCATGGAG
CAGGTCGGCA CGCAGCCTCT GCCGCGCCCC GTACCCGCGC GGGTCAGGCC GGGCTTTTCG
GCAGAGGACC GCCGCCTGCT GGAACTGGTG TCCGGCCACG TGGCCGACGC CCTGGCCGCC
CGGCGCGATC TGGGCCGCCG CGCCCTGGAC GAGGTGCGCT ATCGCGCCTC GTTCATGGAC
GCCGTGGCGG GCATGGCCCT GCTGGATGCC GGGGGCAGGC TGCTGGCGGT GAACCGGGCC
TTCGAGGCTG CCTTCGGCTA TCCCGACGGC GTGCTGGCGG GCACGGACCT GCGCGACCTG
CTGCCCCCGG ACGTGGCCGG GCAGGCCCTG CGCGAGTTCG GCGGACTGTG GCTTTCTGTG
TCGGCCATCC GCGCGGCGGC GGGCATGGGC GAAGCCGCCG GAGGCATGGT GGAGACCTCG
TGGCCGTTCC TGCGGGCCGA CGGTGAAAAG CGCTGGATGC AGCAGAGCCT GCGCATCCTG
CCCGGCGAGG CGGGCCACCC CCCGTGCGCG CTGTTGCAGG TCACCCCGCT GGAGGGCGGC
AACGGACGCG CCGGGCGCGA CCCGGCCACC CGCGACGAGG AGCGCATGAC CCAGACCGCC
TTCCACGACG TGCTCACCGG CCTGCCCAAC CGGGTGCTGC TGCTGGACCG TGTGGAAAGC
GCCCTCAAGC GGGCCCGGCG TCACGATCAT TACCGCTTTG CCGTGCTGTT TCTGGACATC
GACCGCTTCA AGGTGGTCAA CGAAAGTCTG GGCCATCGCG CGGGCGACGA GCTGCTGCGC
CTGTTCTCGG ACCGGGTGCT GCCCTGCCTG CGCGAGGTGG ACACCCTTGC CCGCTGCGGC
GGCGACGAAT TTGCCGTGCT GCTGGACGAC GTGGAAGACA CCGCCGAGGT GGGCACCATC
GTCGAGCGCA TTCAGGACGC CCTGCGCACG CCGTTTCCGG TGCACGACAC CGAGGTGTAC
ATGGCCGCCA GCATCGGCGT GGTGGTGCGC GCCCGGCAGT ACGCATCCGC AGAGGACATC
CTGCGCGACG CCGACCTTGC CATGTTCCGC GCCAAGGAAT CGGGCAAGGG CCGCTACGAA
CTGTTCGACG AGGACGTGCC CTCCGCCGCC CCGGACAAGC TGCGCCGCGA AAACGAACTG
CGCCGGGCCA TGGAGCGCGG CGAGATAGAA CTGTACTTCC AGCCCGTGGT TTCGCTGCGC
ACCGCGCGCA TCACCGGGCT GGAGGCGCTG GTGCGCTGGA ACCACCCGGA CCTCGGCCTG
CTGTCGCCGT CGGAGTTCAT CCCCCTGGCC GAGGAATCGG GGCTGATCTA CCACCTGGAC
CGGCACGTGC TGGAACTGGG CTGCGCCTCC GTGCGCGCCC TGCGCGAACG GGCCGGACCG
GCGGCGGAAT TCGCCCTGAA CCTGAACATT TCCGCGCGCA GCTTCCGCCG CTGGAACATG
GTGGAAAGCT ATTCCTCCGT CATCCTGGAA TCGGGCTGCA ACCCGCTGGA CGTGCGGCTG
GAAATCACCG AAAGCCTGCT GCTGACCGGC GTGGACGCCG TCACCGACAA ATTGTGGAAG
TTCAAGGAAC TGGGCGTCTC GCTGGTGCTC GACGACTTCG GCACCGGCTA TTCCTCGCTG
AATTACCTGC GCCAGTTCCC CATGGACATG ATCAAGATCG ACAAGTCGTT CACCAGCCGC
GTGCACGAGG AAAAGGCCGC CTACGGCATC GTGCAGTCCA TAGTCAGCCT GGGCCGGGGC
CTCGGCCTCG GCGTGGTGGC CGAAGGCATC GAACGGCCCG AACAGGCCGA GGTGCTGCTG
GAACTGGGCT GCCTGTACGG ACAGGGCTTT CTGTACTCCC GCCCGCTGCC CTTCGATCGC
ACCGCCAAGC TGCTGGAACG CCGCTGCCCC CTGCCGCTTT CGGCGGGGTA G
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| Protein sequence | MLREPSGVHT MPGTAESHAE PHADPERSAM AEAMASPNAP RRPALSPLPP PPCVAGDGLF
AGLPDLAAML GKPAPDAVQE EPGAPPAPDT SGAISATDST TQDSPSGASA SGPRGPDQAS
VGRFWPHGDL AAQFGTAGIG VCVFDPAGQL LYMNGRMADL LGCGPEGIPS LFCARLVGLE
GTADVLALFL RVASGQDEGG SVRKRFLRGD GGTMLASVTL YAVHDALGLP LHVVHLVRPL
ERTERSERGG DRSEALARRR FDDVPFPVGW SATDGAQTPG TARPDRYRAA LHLIAHATLH
EADPDSLGAA FTRIFRSLLP GEPPELVVYP GDGSRTVYSS AEAAGRKDAA PPCDLAARVY
LRGETVRVDA EELRELAELG ECLLPDPVPA HWLGVPLRTR TGEVLGAMVC QVAGGEDAER
VGPGTQPVQP DQAERAERME QVGTQPLPRP VPARVRPGFS AEDRRLLELV SGHVADALAA
RRDLGRRALD EVRYRASFMD AVAGMALLDA GGRLLAVNRA FEAAFGYPDG VLAGTDLRDL
LPPDVAGQAL REFGGLWLSV SAIRAAAGMG EAAGGMVETS WPFLRADGEK RWMQQSLRIL
PGEAGHPPCA LLQVTPLEGG NGRAGRDPAT RDEERMTQTA FHDVLTGLPN RVLLLDRVES
ALKRARRHDH YRFAVLFLDI DRFKVVNESL GHRAGDELLR LFSDRVLPCL REVDTLARCG
GDEFAVLLDD VEDTAEVGTI VERIQDALRT PFPVHDTEVY MAASIGVVVR ARQYASAEDI
LRDADLAMFR AKESGKGRYE LFDEDVPSAA PDKLRRENEL RRAMERGEIE LYFQPVVSLR
TARITGLEAL VRWNHPDLGL LSPSEFIPLA EESGLIYHLD RHVLELGCAS VRALRERAGP
AAEFALNLNI SARSFRRWNM VESYSSVILE SGCNPLDVRL EITESLLLTG VDAVTDKLWK
FKELGVSLVL DDFGTGYSSL NYLRQFPMDM IKIDKSFTSR VHEEKAAYGI VQSIVSLGRG
LGLGVVAEGI ERPEQAEVLL ELGCLYGQGF LYSRPLPFDR TAKLLERRCP LPLSAG
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