Gene DvMF_3083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_3083 
Symbol 
ID7175029 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp3891763 
End bp3894993 
Gene Length3231 bp 
Protein Length1076 aa 
Translation table11 
GC content71% 
IMG OID643541620 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002437488 
Protein GI218888167 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones81 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTGCGCG AACCTTCCGG TGTACACACC ATGCCCGGCA CCGCAGAATC GCATGCCGAA 
CCGCATGCCG ATCCGGAACG CTCTGCCATG GCCGAGGCCA TGGCCAGCCC GAACGCCCCC
CGGCGGCCCG CGTTGTCGCC GCTGCCGCCT CCCCCCTGCG TGGCGGGCGA TGGCCTGTTC
GCCGGACTGC CGGACCTGGC CGCCATGCTC GGCAAGCCCG CTCCGGACGC GGTGCAGGAA
GAACCAGGCG CGCCGCCCGC GCCCGACACC TCCGGGGCGA TTTCCGCCAC AGATAGCACC
ACGCAGGATT CCCCGTCCGG CGCGTCTGCA TCGGGCCCGC GCGGACCTGA CCAGGCCTCA
GTCGGCAGGT TCTGGCCCCA TGGCGACCTG GCCGCGCAGT TCGGCACGGC GGGCATCGGC
GTGTGCGTGT TCGACCCGGC GGGCCAACTG CTGTACATGA ACGGTCGCAT GGCCGACCTG
CTGGGCTGCG GCCCGGAAGG CATTCCTTCG TTGTTCTGCG CCCGCCTGGT GGGGCTGGAA
GGCACGGCGG ACGTGCTGGC GCTGTTCCTG CGTGTGGCCT CCGGCCAGGA CGAGGGCGGC
AGCGTGCGCA AGCGCTTCCT GCGCGGCGAC GGCGGCACCA TGCTGGCCTC GGTTACCCTG
TACGCGGTGC ACGACGCCCT GGGCCTGCCG CTGCACGTGG TGCATCTGGT GCGCCCGCTG
GAACGCACGG AGCGGTCCGA AAGGGGCGGC GACCGGTCCG AGGCACTGGC CCGACGCCGT
TTCGACGACG TGCCCTTTCC CGTGGGCTGG TCCGCCACCG ACGGCGCCCA GACGCCCGGC
ACCGCCCGGC CCGACCGCTA TCGCGCCGCA CTGCACCTCA TTGCCCACGC CACCCTGCAC
GAGGCCGACC CCGACAGCCT GGGGGCGGCC TTCACGCGCA TCTTCCGTTC GCTGCTGCCG
GGCGAGCCGC CGGAACTGGT GGTCTACCCC GGCGACGGCA GCCGCACCGT GTATTCGTCC
GCCGAGGCTG CCGGGCGCAA GGATGCCGCG CCCCCGTGCG ACCTTGCGGC GCGGGTGTAC
CTGCGCGGCG AGACCGTGCG CGTGGACGCC GAAGAACTGC GCGAACTGGC CGAGCTTGGC
GAATGCCTGC TGCCCGATCC CGTGCCCGCC CATTGGCTGG GGGTGCCGCT GCGCACCCGC
ACCGGAGAGG TGCTGGGGGC CATGGTGTGC CAGGTGGCGG GCGGGGAAGA TGCCGAGCGG
GTCGGCCCCG GTACTCAGCC AGTTCAGCCC GATCAGGCAG AACGGGCAGA ACGCATGGAG
CAGGTCGGCA CGCAGCCTCT GCCGCGCCCC GTACCCGCGC GGGTCAGGCC GGGCTTTTCG
GCAGAGGACC GCCGCCTGCT GGAACTGGTG TCCGGCCACG TGGCCGACGC CCTGGCCGCC
CGGCGCGATC TGGGCCGCCG CGCCCTGGAC GAGGTGCGCT ATCGCGCCTC GTTCATGGAC
GCCGTGGCGG GCATGGCCCT GCTGGATGCC GGGGGCAGGC TGCTGGCGGT GAACCGGGCC
TTCGAGGCTG CCTTCGGCTA TCCCGACGGC GTGCTGGCGG GCACGGACCT GCGCGACCTG
CTGCCCCCGG ACGTGGCCGG GCAGGCCCTG CGCGAGTTCG GCGGACTGTG GCTTTCTGTG
TCGGCCATCC GCGCGGCGGC GGGCATGGGC GAAGCCGCCG GAGGCATGGT GGAGACCTCG
TGGCCGTTCC TGCGGGCCGA CGGTGAAAAG CGCTGGATGC AGCAGAGCCT GCGCATCCTG
CCCGGCGAGG CGGGCCACCC CCCGTGCGCG CTGTTGCAGG TCACCCCGCT GGAGGGCGGC
AACGGACGCG CCGGGCGCGA CCCGGCCACC CGCGACGAGG AGCGCATGAC CCAGACCGCC
TTCCACGACG TGCTCACCGG CCTGCCCAAC CGGGTGCTGC TGCTGGACCG TGTGGAAAGC
GCCCTCAAGC GGGCCCGGCG TCACGATCAT TACCGCTTTG CCGTGCTGTT TCTGGACATC
GACCGCTTCA AGGTGGTCAA CGAAAGTCTG GGCCATCGCG CGGGCGACGA GCTGCTGCGC
CTGTTCTCGG ACCGGGTGCT GCCCTGCCTG CGCGAGGTGG ACACCCTTGC CCGCTGCGGC
GGCGACGAAT TTGCCGTGCT GCTGGACGAC GTGGAAGACA CCGCCGAGGT GGGCACCATC
GTCGAGCGCA TTCAGGACGC CCTGCGCACG CCGTTTCCGG TGCACGACAC CGAGGTGTAC
ATGGCCGCCA GCATCGGCGT GGTGGTGCGC GCCCGGCAGT ACGCATCCGC AGAGGACATC
CTGCGCGACG CCGACCTTGC CATGTTCCGC GCCAAGGAAT CGGGCAAGGG CCGCTACGAA
CTGTTCGACG AGGACGTGCC CTCCGCCGCC CCGGACAAGC TGCGCCGCGA AAACGAACTG
CGCCGGGCCA TGGAGCGCGG CGAGATAGAA CTGTACTTCC AGCCCGTGGT TTCGCTGCGC
ACCGCGCGCA TCACCGGGCT GGAGGCGCTG GTGCGCTGGA ACCACCCGGA CCTCGGCCTG
CTGTCGCCGT CGGAGTTCAT CCCCCTGGCC GAGGAATCGG GGCTGATCTA CCACCTGGAC
CGGCACGTGC TGGAACTGGG CTGCGCCTCC GTGCGCGCCC TGCGCGAACG GGCCGGACCG
GCGGCGGAAT TCGCCCTGAA CCTGAACATT TCCGCGCGCA GCTTCCGCCG CTGGAACATG
GTGGAAAGCT ATTCCTCCGT CATCCTGGAA TCGGGCTGCA ACCCGCTGGA CGTGCGGCTG
GAAATCACCG AAAGCCTGCT GCTGACCGGC GTGGACGCCG TCACCGACAA ATTGTGGAAG
TTCAAGGAAC TGGGCGTCTC GCTGGTGCTC GACGACTTCG GCACCGGCTA TTCCTCGCTG
AATTACCTGC GCCAGTTCCC CATGGACATG ATCAAGATCG ACAAGTCGTT CACCAGCCGC
GTGCACGAGG AAAAGGCCGC CTACGGCATC GTGCAGTCCA TAGTCAGCCT GGGCCGGGGC
CTCGGCCTCG GCGTGGTGGC CGAAGGCATC GAACGGCCCG AACAGGCCGA GGTGCTGCTG
GAACTGGGCT GCCTGTACGG ACAGGGCTTT CTGTACTCCC GCCCGCTGCC CTTCGATCGC
ACCGCCAAGC TGCTGGAACG CCGCTGCCCC CTGCCGCTTT CGGCGGGGTA G
 
Protein sequence
MLREPSGVHT MPGTAESHAE PHADPERSAM AEAMASPNAP RRPALSPLPP PPCVAGDGLF 
AGLPDLAAML GKPAPDAVQE EPGAPPAPDT SGAISATDST TQDSPSGASA SGPRGPDQAS
VGRFWPHGDL AAQFGTAGIG VCVFDPAGQL LYMNGRMADL LGCGPEGIPS LFCARLVGLE
GTADVLALFL RVASGQDEGG SVRKRFLRGD GGTMLASVTL YAVHDALGLP LHVVHLVRPL
ERTERSERGG DRSEALARRR FDDVPFPVGW SATDGAQTPG TARPDRYRAA LHLIAHATLH
EADPDSLGAA FTRIFRSLLP GEPPELVVYP GDGSRTVYSS AEAAGRKDAA PPCDLAARVY
LRGETVRVDA EELRELAELG ECLLPDPVPA HWLGVPLRTR TGEVLGAMVC QVAGGEDAER
VGPGTQPVQP DQAERAERME QVGTQPLPRP VPARVRPGFS AEDRRLLELV SGHVADALAA
RRDLGRRALD EVRYRASFMD AVAGMALLDA GGRLLAVNRA FEAAFGYPDG VLAGTDLRDL
LPPDVAGQAL REFGGLWLSV SAIRAAAGMG EAAGGMVETS WPFLRADGEK RWMQQSLRIL
PGEAGHPPCA LLQVTPLEGG NGRAGRDPAT RDEERMTQTA FHDVLTGLPN RVLLLDRVES
ALKRARRHDH YRFAVLFLDI DRFKVVNESL GHRAGDELLR LFSDRVLPCL REVDTLARCG
GDEFAVLLDD VEDTAEVGTI VERIQDALRT PFPVHDTEVY MAASIGVVVR ARQYASAEDI
LRDADLAMFR AKESGKGRYE LFDEDVPSAA PDKLRRENEL RRAMERGEIE LYFQPVVSLR
TARITGLEAL VRWNHPDLGL LSPSEFIPLA EESGLIYHLD RHVLELGCAS VRALRERAGP
AAEFALNLNI SARSFRRWNM VESYSSVILE SGCNPLDVRL EITESLLLTG VDAVTDKLWK
FKELGVSLVL DDFGTGYSSL NYLRQFPMDM IKIDKSFTSR VHEEKAAYGI VQSIVSLGRG
LGLGVVAEGI ERPEQAEVLL ELGCLYGQGF LYSRPLPFDR TAKLLERRCP LPLSAG