Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_3083 |
Symbol | |
ID | 7175029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 3891763 |
End bp | 3894993 |
Gene Length | 3231 bp |
Protein Length | 1076 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643541620 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002437488 |
Protein GI | 218888167 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTTGCGCG AACCTTCCGG TGTACACACC ATGCCCGGCA CCGCAGAATC GCATGCCGAA CCGCATGCCG ATCCGGAACG CTCTGCCATG GCCGAGGCCA TGGCCAGCCC GAACGCCCCC CGGCGGCCCG CGTTGTCGCC GCTGCCGCCT CCCCCCTGCG TGGCGGGCGA TGGCCTGTTC GCCGGACTGC CGGACCTGGC CGCCATGCTC GGCAAGCCCG CTCCGGACGC GGTGCAGGAA GAACCAGGCG CGCCGCCCGC GCCCGACACC TCCGGGGCGA TTTCCGCCAC AGATAGCACC ACGCAGGATT CCCCGTCCGG CGCGTCTGCA TCGGGCCCGC GCGGACCTGA CCAGGCCTCA GTCGGCAGGT TCTGGCCCCA TGGCGACCTG GCCGCGCAGT TCGGCACGGC GGGCATCGGC GTGTGCGTGT TCGACCCGGC GGGCCAACTG CTGTACATGA ACGGTCGCAT GGCCGACCTG CTGGGCTGCG GCCCGGAAGG CATTCCTTCG TTGTTCTGCG CCCGCCTGGT GGGGCTGGAA GGCACGGCGG ACGTGCTGGC GCTGTTCCTG CGTGTGGCCT CCGGCCAGGA CGAGGGCGGC AGCGTGCGCA AGCGCTTCCT GCGCGGCGAC GGCGGCACCA TGCTGGCCTC GGTTACCCTG TACGCGGTGC ACGACGCCCT GGGCCTGCCG CTGCACGTGG TGCATCTGGT GCGCCCGCTG GAACGCACGG AGCGGTCCGA AAGGGGCGGC GACCGGTCCG AGGCACTGGC CCGACGCCGT TTCGACGACG TGCCCTTTCC CGTGGGCTGG TCCGCCACCG ACGGCGCCCA GACGCCCGGC ACCGCCCGGC CCGACCGCTA TCGCGCCGCA CTGCACCTCA TTGCCCACGC CACCCTGCAC GAGGCCGACC CCGACAGCCT GGGGGCGGCC TTCACGCGCA TCTTCCGTTC GCTGCTGCCG GGCGAGCCGC CGGAACTGGT GGTCTACCCC GGCGACGGCA GCCGCACCGT GTATTCGTCC GCCGAGGCTG CCGGGCGCAA GGATGCCGCG CCCCCGTGCG ACCTTGCGGC GCGGGTGTAC CTGCGCGGCG AGACCGTGCG CGTGGACGCC GAAGAACTGC GCGAACTGGC CGAGCTTGGC GAATGCCTGC TGCCCGATCC CGTGCCCGCC CATTGGCTGG GGGTGCCGCT GCGCACCCGC ACCGGAGAGG TGCTGGGGGC CATGGTGTGC CAGGTGGCGG GCGGGGAAGA TGCCGAGCGG GTCGGCCCCG GTACTCAGCC AGTTCAGCCC GATCAGGCAG AACGGGCAGA ACGCATGGAG CAGGTCGGCA CGCAGCCTCT GCCGCGCCCC GTACCCGCGC GGGTCAGGCC GGGCTTTTCG GCAGAGGACC GCCGCCTGCT GGAACTGGTG TCCGGCCACG TGGCCGACGC CCTGGCCGCC CGGCGCGATC TGGGCCGCCG CGCCCTGGAC GAGGTGCGCT ATCGCGCCTC GTTCATGGAC GCCGTGGCGG GCATGGCCCT GCTGGATGCC GGGGGCAGGC TGCTGGCGGT GAACCGGGCC TTCGAGGCTG CCTTCGGCTA TCCCGACGGC GTGCTGGCGG GCACGGACCT GCGCGACCTG CTGCCCCCGG ACGTGGCCGG GCAGGCCCTG CGCGAGTTCG GCGGACTGTG GCTTTCTGTG TCGGCCATCC GCGCGGCGGC GGGCATGGGC GAAGCCGCCG GAGGCATGGT GGAGACCTCG TGGCCGTTCC TGCGGGCCGA CGGTGAAAAG CGCTGGATGC AGCAGAGCCT GCGCATCCTG CCCGGCGAGG CGGGCCACCC CCCGTGCGCG CTGTTGCAGG TCACCCCGCT GGAGGGCGGC AACGGACGCG CCGGGCGCGA CCCGGCCACC CGCGACGAGG AGCGCATGAC CCAGACCGCC TTCCACGACG TGCTCACCGG CCTGCCCAAC CGGGTGCTGC TGCTGGACCG TGTGGAAAGC GCCCTCAAGC GGGCCCGGCG TCACGATCAT TACCGCTTTG CCGTGCTGTT TCTGGACATC GACCGCTTCA AGGTGGTCAA CGAAAGTCTG GGCCATCGCG CGGGCGACGA GCTGCTGCGC CTGTTCTCGG ACCGGGTGCT GCCCTGCCTG CGCGAGGTGG ACACCCTTGC CCGCTGCGGC GGCGACGAAT TTGCCGTGCT GCTGGACGAC GTGGAAGACA CCGCCGAGGT GGGCACCATC GTCGAGCGCA TTCAGGACGC CCTGCGCACG CCGTTTCCGG TGCACGACAC CGAGGTGTAC ATGGCCGCCA GCATCGGCGT GGTGGTGCGC GCCCGGCAGT ACGCATCCGC AGAGGACATC CTGCGCGACG CCGACCTTGC CATGTTCCGC GCCAAGGAAT CGGGCAAGGG CCGCTACGAA CTGTTCGACG AGGACGTGCC CTCCGCCGCC CCGGACAAGC TGCGCCGCGA AAACGAACTG CGCCGGGCCA TGGAGCGCGG CGAGATAGAA CTGTACTTCC AGCCCGTGGT TTCGCTGCGC ACCGCGCGCA TCACCGGGCT GGAGGCGCTG GTGCGCTGGA ACCACCCGGA CCTCGGCCTG CTGTCGCCGT CGGAGTTCAT CCCCCTGGCC GAGGAATCGG GGCTGATCTA CCACCTGGAC CGGCACGTGC TGGAACTGGG CTGCGCCTCC GTGCGCGCCC TGCGCGAACG GGCCGGACCG GCGGCGGAAT TCGCCCTGAA CCTGAACATT TCCGCGCGCA GCTTCCGCCG CTGGAACATG GTGGAAAGCT ATTCCTCCGT CATCCTGGAA TCGGGCTGCA ACCCGCTGGA CGTGCGGCTG GAAATCACCG AAAGCCTGCT GCTGACCGGC GTGGACGCCG TCACCGACAA ATTGTGGAAG TTCAAGGAAC TGGGCGTCTC GCTGGTGCTC GACGACTTCG GCACCGGCTA TTCCTCGCTG AATTACCTGC GCCAGTTCCC CATGGACATG ATCAAGATCG ACAAGTCGTT CACCAGCCGC GTGCACGAGG AAAAGGCCGC CTACGGCATC GTGCAGTCCA TAGTCAGCCT GGGCCGGGGC CTCGGCCTCG GCGTGGTGGC CGAAGGCATC GAACGGCCCG AACAGGCCGA GGTGCTGCTG GAACTGGGCT GCCTGTACGG ACAGGGCTTT CTGTACTCCC GCCCGCTGCC CTTCGATCGC ACCGCCAAGC TGCTGGAACG CCGCTGCCCC CTGCCGCTTT CGGCGGGGTA G
|
Protein sequence | MLREPSGVHT MPGTAESHAE PHADPERSAM AEAMASPNAP RRPALSPLPP PPCVAGDGLF AGLPDLAAML GKPAPDAVQE EPGAPPAPDT SGAISATDST TQDSPSGASA SGPRGPDQAS VGRFWPHGDL AAQFGTAGIG VCVFDPAGQL LYMNGRMADL LGCGPEGIPS LFCARLVGLE GTADVLALFL RVASGQDEGG SVRKRFLRGD GGTMLASVTL YAVHDALGLP LHVVHLVRPL ERTERSERGG DRSEALARRR FDDVPFPVGW SATDGAQTPG TARPDRYRAA LHLIAHATLH EADPDSLGAA FTRIFRSLLP GEPPELVVYP GDGSRTVYSS AEAAGRKDAA PPCDLAARVY LRGETVRVDA EELRELAELG ECLLPDPVPA HWLGVPLRTR TGEVLGAMVC QVAGGEDAER VGPGTQPVQP DQAERAERME QVGTQPLPRP VPARVRPGFS AEDRRLLELV SGHVADALAA RRDLGRRALD EVRYRASFMD AVAGMALLDA GGRLLAVNRA FEAAFGYPDG VLAGTDLRDL LPPDVAGQAL REFGGLWLSV SAIRAAAGMG EAAGGMVETS WPFLRADGEK RWMQQSLRIL PGEAGHPPCA LLQVTPLEGG NGRAGRDPAT RDEERMTQTA FHDVLTGLPN RVLLLDRVES ALKRARRHDH YRFAVLFLDI DRFKVVNESL GHRAGDELLR LFSDRVLPCL REVDTLARCG GDEFAVLLDD VEDTAEVGTI VERIQDALRT PFPVHDTEVY MAASIGVVVR ARQYASAEDI LRDADLAMFR AKESGKGRYE LFDEDVPSAA PDKLRRENEL RRAMERGEIE LYFQPVVSLR TARITGLEAL VRWNHPDLGL LSPSEFIPLA EESGLIYHLD RHVLELGCAS VRALRERAGP AAEFALNLNI SARSFRRWNM VESYSSVILE SGCNPLDVRL EITESLLLTG VDAVTDKLWK FKELGVSLVL DDFGTGYSSL NYLRQFPMDM IKIDKSFTSR VHEEKAAYGI VQSIVSLGRG LGLGVVAEGI ERPEQAEVLL ELGCLYGQGF LYSRPLPFDR TAKLLERRCP LPLSAG
|
| |