| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2963 |
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| Symbol | |
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| ID | 7174905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 3736161 |
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| End bp | 3739916 |
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| Gene Length | 3756 bp |
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| Protein Length | 1251 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643541496 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_002437368 |
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| Protein GI | 218888047 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 0.246733 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCC GCCGCAAGGC GCCCTGGCCG CAGGAGGCAT CGTCGCATGC GCCCTCGCGC
GTGACTGCCG ACTGCCCGCG CCGCTCCCGC ATGACACAGC CAGGACTTGT GCCTGCCGCA
CGCCATCACG CCGCAGATAC CCCCCGACGC ATTCGCCGCC TGCGCACCCC GCCCCACCCG
CGCCTTGTGC TCCACGCGTT TCGCCTGCCG GTTCTCCCGT TCGTACCGCG CCTGCGTTTG
CCCCTGCCGA CCCTGATCGA CATTGGCGCC GTTGCCGCCG CTGCCATCGT CACCCCCATT
GCCACTGTGC GCCCGGCCTG GGCCGCCGTC GAAGGCGCCG TGCCGTGGAC GTCGTCCGCG
CTGCTGTTCG GCCTTGCCGC CGGGCTGGTG CTGGGCCTGC TGGCGGGGTT GCGGCTGCGG
CGCGGCAAGG CCGCTGGCGC GAAACAGGAT GTTCAGCGGG GTGCTCTGCC TCATGCGCAC
GCCGCCGCTT CGGGGCAGGC AGACGCTTCG ACTCAGGCGG TGGACCTGGA CCGGGCACGC
GAACAGTACC ACGCCATCTT CACCAACGCG CCGGTGGGCA TCTTCCGCGT GACGCCCGAA
GGCCGCTACG AGAACGTCAA CCCGGAATAC GCGCGCATCT GGGGCTGCCC CACCACGGAA
GAAATGCTGG AATGCGTCTC GGACATTCCC CGGCAGATGT ACGCCAATCC GGCTGACCGC
CAGCGCTTCG TGGGTGCGTT GCAGGCCACG GGCCGCGTGG ACCGCATGGA ACTGCGCCTC
AAGCGGCGCG ACGGCAGCCT GTTCTGGGGG CTTGTCAGCG CGCGTCTGGT GCGCGGCCCT
GCTCCTGCCC AGGCTGCGCA AACGGGCCAG ATCGCCAAAA CTGGCCAGAC TGCCGGAACT
GGCGTTACGA ACGGCACGTA CCGTGCCGAC GCAAAGGCGG GCAACGCCCC GGCAGAGGTC
GACTACATCG ACGGCTTCGT GCTGGACATC ACCGAACAGA AGGCGATGCA GGATCAGCTT
TCCGAGGCGT GGCGCAGGCT GCGCGACATC ATCGACTTTC TGCCCGACGC CGTTCTGGTG
CTGGACGCAA GCCGCCGGGT CATCGCCTGG AACCGCGCCA TGGAGGAAAT GACCGGCCAT
TCCGCCAGCG AAATGCTGGG ACGCGGCAAC TTCGCATATG CCCTGCCCTT CTACGGCGAA
CGCATCCCCC TGCTGGGCGA CTGGTTCTTC AGTCCGGACA TGCCCCAGCC CAGCCACTAC
ACCCGGTTCA GCGAGCACGG CGACAAACTG GCGGCAGAGG CCTACGTGCC CACGCTGTTC
GGCGGTCGGG GCGCCCACGT GTGGACCGTG GCATCCGCCC TGCGCGACGG CGAAGGGCGG
CTGAACGGGG TCATCCAGAC CATCCGCGAC ATCACCGAGC GGCACAACCA GATGCGGGAA
CTGGAAAAAA GCCGCCAGCG CTACGACATG GCCATCTCCG CCACCAACGA CGGCATCTGG
GAATGGGAGT TGGACACCAA TACCCTGTAC CATTCGCCGC GCTGCCTCGA AATCCTGGGG
CGTGCCCCCG ACGCGACCCT GTCGCCCATG GCCATCGCGG CCATCCTGCA CCCGGAGGAC
AGGCTGCGCG TGCTGACGGA GGTGCGCCGC ATCACCGGAG AGGACGCGGA ACGCTTCGAG
CATGAATTCC GCATCCGCCA CACCGACGGC ACGTGGCGCT GGGTTCTGGC GCGCGGCGCG
GCCCGGCGCG GCCCCGGCGG ACGCCTGAAC CGCGTGGCCG GGGCGCTGGC CGACATCACC
GACCACAAGC AGGGCGACGC CATTGCGGGC ATCCTGTTCC ACATCGCCAA CGCCATCAAC
GAAACGCGCG ACCTGGACGA ACTGTTCCTG TCCATCCACA CCGCCCTGCG CCGCCACGTG
CAGGCCCCCA ACTTCTTCAT CGCCCTGATC AACGAACCGG AAGACCGGCT GGACTTCGCC
TACTTCGCCG ACGAGCGCGA CGCCCGCTAC AACCCGGTGG AGCACATTTC CGACCCCGCC
GTGCAAAGCC CAACGCTGGA GGTCATCCGC ACCGGCAGGC AGGTGCACCT GCACAGCGAC
GACATCGAGG CGCGCCCGGT GTTCGGGTCG CGCCCGGCGG CCTGGCTGGG CACCCCGCTG
CGCTCGCGCG GCAAGGTCAT CGGGGCCATG GTGGTGCAAC ACTACGAGGA TTCGGAATTC
TTCTCGGCCC GCGACGCGGA ACTGATGGTG CCGGTGGCCG AACAGGTGGC CGTGGCCATA
GAACGCAAGC AGGGCGAGGA AATGCTGACC CATCTCGCCC TGCACGATCC GCTTACCGGC
CTGCCCAACC GCGCCCTGCT GCTGGACCGC ATCGAGCGGG CCATCCAGCG CCGCCGCCGC
AACGACAGCT ACCGCTTTGC CGTGCTGATG CTGGACCTGG ACCGCTTCAA GTTCATCAAC
GACAGCCACG GCCACACCAC CGGCGACAAC CTGCTGGTGG AAGTGGCCCG GCGCATGCGC
CCGGTGGTGC GCGCGGGCGA CACCGTGGCC CGCCTTGGCG GCGACGAGTT TGCCCTGCTG
CTGGAAGACG TGGACTCGCC CCGGCGCATC GTGCAGATCA CCCGCCGCCT GCTGGCCGCG
CTGGAACGCC CGGTGCGCAT GGGCGCCAAG GTGGTGCGCA CGTCCGCCAG CATCGGCATG
GTCCTGCGCA CCCAGGGGTA CGACACCGCC GACGCGCTGC TGCGCGACGC GGACATCGCC
ATGTACCAGG CCAAGGCCCA GGGCAAGGGG CGGTTCCGGG TGTTCAACCA GTCCATGCAC
CGCCACACCA TGGAAATGAT GACCCTGGAA GGCGACCTTT CCATGGCCAT GCGCCGCAAG
CAGCTGTACC TGGAGTACCA GCCGGTGCTC GCCGTGGACG GCGCGCGGCT TCTGGGCTTC
GAGGCGCTGG TGCGCTGGCG CCACCCCACC GAAGGCGCGG TACCGCCAGC CCGGTTCATT
CCCATGGCCG AGGAAACGGG GCTGATCCTG CGCATCGGCC AATGGGTGCT GGAACAGGCG
GCGGCTACCC TGGCCCGCTG GCGGGCCACC CTGCCCGGCG CGCATGACCT GTACGTTTCG
GTAAACCTTT CGGCGCGGCA GGCCTCGCAG CCCAACCTTA CCGGGCGCGT GGCCCGCATC
CTGTCCGACA CCGGGCTGCC GCCGGAAGCC CTGAAGCTGG AGATAACCGA AACGGCCATC
ATGAAGGACC CGGACGGCGC GTTGCAACGG CTGGAAGCGC TGCGCAGGCT GGGGGTGGGC
ATCGGCATCG ACGACTTCGG CACCGGCTAC TCGTCGCTGG CATACCTGCA ACGTTTTCCG
GTGGATACGT TGAAGGTGGA CCGTTCGTTC GTGTCCGCCG TGGCCGGGGA TGCGGAAAAC
CGCGAGATCG TGCGCACCGT GGTCACCCTG GGCCGCAGCC TGGGCCTGCA CGTGGTGGCC
GAAGGAGTGG AGACGGCGGA ACAGTTCGCC ATCGTGGCGG AACTGGGCTG CCACTCGGTG
CAGGGGTACC ATTTCTCCCG CCCCGTTGCC GAGGAGCGGG CCGTGGCGTT CATCGCCGCC
GGGGGCGTTC CCGACGCTTC CACGGGCACG ACTGCCCCGA CAGGGGCCGG TGGCCCAGAC
GGACTCCGTG GCCCAGACGA GCCCGATGGC CCGGACGGGC CAGGTGAGCC GGATGGGCCG
GATGAGCCGG ACGCCAGCGC CCCCGCAACA ACCTAA
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| Protein sequence | MTTRRKAPWP QEASSHAPSR VTADCPRRSR MTQPGLVPAA RHHAADTPRR IRRLRTPPHP
RLVLHAFRLP VLPFVPRLRL PLPTLIDIGA VAAAAIVTPI ATVRPAWAAV EGAVPWTSSA
LLFGLAAGLV LGLLAGLRLR RGKAAGAKQD VQRGALPHAH AAASGQADAS TQAVDLDRAR
EQYHAIFTNA PVGIFRVTPE GRYENVNPEY ARIWGCPTTE EMLECVSDIP RQMYANPADR
QRFVGALQAT GRVDRMELRL KRRDGSLFWG LVSARLVRGP APAQAAQTGQ IAKTGQTAGT
GVTNGTYRAD AKAGNAPAEV DYIDGFVLDI TEQKAMQDQL SEAWRRLRDI IDFLPDAVLV
LDASRRVIAW NRAMEEMTGH SASEMLGRGN FAYALPFYGE RIPLLGDWFF SPDMPQPSHY
TRFSEHGDKL AAEAYVPTLF GGRGAHVWTV ASALRDGEGR LNGVIQTIRD ITERHNQMRE
LEKSRQRYDM AISATNDGIW EWELDTNTLY HSPRCLEILG RAPDATLSPM AIAAILHPED
RLRVLTEVRR ITGEDAERFE HEFRIRHTDG TWRWVLARGA ARRGPGGRLN RVAGALADIT
DHKQGDAIAG ILFHIANAIN ETRDLDELFL SIHTALRRHV QAPNFFIALI NEPEDRLDFA
YFADERDARY NPVEHISDPA VQSPTLEVIR TGRQVHLHSD DIEARPVFGS RPAAWLGTPL
RSRGKVIGAM VVQHYEDSEF FSARDAELMV PVAEQVAVAI ERKQGEEMLT HLALHDPLTG
LPNRALLLDR IERAIQRRRR NDSYRFAVLM LDLDRFKFIN DSHGHTTGDN LLVEVARRMR
PVVRAGDTVA RLGGDEFALL LEDVDSPRRI VQITRRLLAA LERPVRMGAK VVRTSASIGM
VLRTQGYDTA DALLRDADIA MYQAKAQGKG RFRVFNQSMH RHTMEMMTLE GDLSMAMRRK
QLYLEYQPVL AVDGARLLGF EALVRWRHPT EGAVPPARFI PMAEETGLIL RIGQWVLEQA
AATLARWRAT LPGAHDLYVS VNLSARQASQ PNLTGRVARI LSDTGLPPEA LKLEITETAI
MKDPDGALQR LEALRRLGVG IGIDDFGTGY SSLAYLQRFP VDTLKVDRSF VSAVAGDAEN
REIVRTVVTL GRSLGLHVVA EGVETAEQFA IVAELGCHSV QGYHFSRPVA EERAVAFIAA
GGVPDASTGT TAPTGAGGPD GLRGPDEPDG PDGPGEPDGP DEPDASAPAT T
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