| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2786 |
|---|
| Symbol | |
|---|
| ID | 7174725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 3527193 |
|---|
| End bp | 3528983 |
|---|
| Gene Length | 1791 bp |
|---|
| Protein Length | 596 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643541318 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_002437192 |
|---|
| Protein GI | 218887871 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 86 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGAT ACTGGCTGGA AAAGACCTGG GTCCAGAACG CGGTCCTCAT CTCGCTGGCG
ACGTTCGCCA TCTACTACTG CGGCTGGGTC TTCGACTTCG GCTACGAATT CAAGTGGAGC
ATGCTCTTCA CGCGCAACGA GACCTACGGC GTGGTCATGG GCGCGGAAAT CCTGAAGGGC
CTTGCCAACA CGGTGCGCAT CTCGCTGATC AGTTCGGCCC TTGCGCTGCT GCTGGGCACC
ATGCTGGGCC TTGCGCGGCT CTCGCTGTTC CGCCCGCTGC GGGTCACGGC CACCTGCGTC
ATCGAATTCT TCCGCAACAC GCCGCTGCTC ATCCAGCTGT TCTTCTGGTA TTTCGCCTTT
CCGGCCATTC TGCCCGACAA CGCGCGCGAG GCGCTGTTCT CCATCCAGTT CGAATTCTGG
TGCGCCACCA TCGGCCTGTC CATCTACACC GCCTCGTTCA TGGCCGAAGT CATCCGCGCC
GGGCTCCAGT CCATCCCCAA GGGGCTGCTG GAAGCGGCTT ACTCCTCTGG CCTGTCCTAT
TTCCAGGTGC TGCGCACCAT CATCCTGCCG CTGGCGTTCC GGGCCATCAT TCCGCCGCTG
GGCAGCGAGT TCCTGAACAA CATGAAGAAC TCGTCGCTGG CCATGGTGGT GGGCGTGGCG
GAACTTACCT GGCATGCCCA GCAGGTGGAA TCGCTGACCT TCAAGGGCTT CGAGGCCACC
AGCGCCGCCA CGGTGCTGTA CCTTTCGCTG TCGCTGATAA TCTCGTTCAT CCTCAACGGG
GTGAACGGAC GCATGCGGCT CGACACCGCC CCCGGCCGAT CGATTCCGGT GCTGGTGGTG
GGCGCGCTGC TGACGCCCCT GGGGCTCATC CGCCGCATGT TCATCCGGCC CGTCACCCGC
GCCCTGCGGG CCCGCCGCCG CGCCGCCGCC CAGACCACCT ACACCCCGCT GGCGGCCATG
CTGCACCAGT GGGGCGGGTA CGCCGCCCGC GCCGCCGTGC TGGCGGGCAA GGGGCTGTTC
GTGGCGCTGC TGGCCGGGCT GCTCTATTCG GTGGGCAAGG GGCTGCTGGG CTTTCAGTGG
CACGTGGTGT TCGAAAACCT GCGTTCCCTG CTCATCTGGC ACTTTCCCAC CGGGCGACCG
GACGAGATGT TCCTGGGCCT TGGCGGCCTT GCCTATTCGC TGCTGATGGC CGTCATCGCC
ATTTCGGTCA GCTTCTTCAT CGGGCTTGCC GTGGGCGTGG GGCGCTCGTC GTCCAACCGG
GTGTTCCGCA TCCCCTGCCT GCTGTACATC GAGCTGATTC GCGGCAACCC GCTGATCATC
GTCATCTTCT GGGTGTACTT CTTCATCCCG GTCATGTTCG GCACCACGCT GAACGTGTTC
TGGTCGGCCA CGTGGGCGCT GACGGCCTTT ACCGGGGCCT ACATCGCCGA AATCGTGCGC
ACCGGCATCC AGAACATTCC CGCCGGCCAG GTGGAGGCGG CCTACTCCAC GGGCCTCACC
TACCTGCAGG CCATGCGCAG GATCGTGCTG CCCCAGGCGC TGAAGCAGAT GATTCCCGCC
ATCGTGGGCC AGTTCATCGC CATTTTCAAG GACACCTCGC TGGCCTTCGT GCTGGGCGTG
CTGGAACTGA CCTTCGTGGC CCAAGGCATC AACAACCGCC TGATGATCCA CCCCATGGAA
ATCTACGGCA CGGTGGCCTT CCTCTACTTC ATCTGCTGCT ACTCCATGTC GGTGTTCGCG
GCGCGGCTGG AACGCAGGCT GTCGCCGGAA AAGGTCAGCC TGCGCATGTG A
|
|---|
| Protein sequence | MIRYWLEKTW VQNAVLISLA TFAIYYCGWV FDFGYEFKWS MLFTRNETYG VVMGAEILKG
LANTVRISLI SSALALLLGT MLGLARLSLF RPLRVTATCV IEFFRNTPLL IQLFFWYFAF
PAILPDNARE ALFSIQFEFW CATIGLSIYT ASFMAEVIRA GLQSIPKGLL EAAYSSGLSY
FQVLRTIILP LAFRAIIPPL GSEFLNNMKN SSLAMVVGVA ELTWHAQQVE SLTFKGFEAT
SAATVLYLSL SLIISFILNG VNGRMRLDTA PGRSIPVLVV GALLTPLGLI RRMFIRPVTR
ALRARRRAAA QTTYTPLAAM LHQWGGYAAR AAVLAGKGLF VALLAGLLYS VGKGLLGFQW
HVVFENLRSL LIWHFPTGRP DEMFLGLGGL AYSLLMAVIA ISVSFFIGLA VGVGRSSSNR
VFRIPCLLYI ELIRGNPLII VIFWVYFFIP VMFGTTLNVF WSATWALTAF TGAYIAEIVR
TGIQNIPAGQ VEAAYSTGLT YLQAMRRIVL PQALKQMIPA IVGQFIAIFK DTSLAFVLGV
LELTFVAQGI NNRLMIHPME IYGTVAFLYF ICCYSMSVFA ARLERRLSPE KVSLRM
|
|---|
| |