| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2779 |
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| Symbol | |
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| ID | 7174718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3515359 |
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| End bp | 3517572 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643541311 |
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| Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
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| Protein accession | YP_002437185 |
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| Protein GI | 218887864 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 80 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACGACGA GGAGAGCATC CGTTTCACCC TTTCGGCCTT CCTGCGCCGC GACGGGCACG
TGGTGGTCAC CGCCGCCAGC CCTGGACGAG GCGCTGCATG CGCTGGACCC CGCCAACGGC
GGCCCGCCGG ACCTGGTCAT CACCGACATC ATCCTGCGCG GCGAGAACGG GCTGGACTTC
GCCCGCACCG TGCGCGAACG GTGTCCCTTC GTGCCGGTCA TCCTGCTGAC CGGGCGGCCC
AGCGTGGAAT CCGCCGTGCG GGCGGTGGCG GAAGGGGCGG AGCAGTACCT GACCAAGCCG
GTGGACAAGG AGCAGATGCT TCAGGCTGCC CGTACGGCCC TGCGCCACAA GGCCCTGGAC
GACGAGCGCC GCGCGCTGGT GGTCGAACGC GAGAATCTGC GGGTGCATCT GGAAGCGGTG
TTCCAGGCCG TGCCCGACGT GCTGGTGACC GTGACGCCCG ACCTGCGGAT ACAGCGCATG
AACCTGGCCG CGCGGGAACT GCCTGGCGGC GCGCGCGATG CGCGCCAGGC CGCGGGGAGG
CGCTTTGACG AGGCCCTGGG GCTGTTCGCG CCGTTGTTCC GTCCGGTGCT GGACGAAACC
CTGGGGGCGC GCCGGGCTTC GCGGCGGCGC CGGGTTTCCG CCCAACTGAC CGACGGGCGC
GAGCAGGTGT TCGAGATAGA GGCCGCGCCG CTGGTGGGAG CGGGGGGTGA ATTTCTGGGC
GCACTGCTGG TGGCGCGCGA CGTCACCCGT CTGGCCGGGC TGGAAGAGGC CCTGGGCCAG
CGGACGGGCA TGAACCAGAT CATCGGTCGC AGCGCGCCCA TGTCCGAGCT GTTCCACCTG
CTGGACGAAC TGGCCCAGAC CGACACCACC GTGCTCATCA CCGGAGAATC GGGCACCGGC
AAGGAACTGG TGGCCGAGGC GCTGCACCGG GGCGGGCCGC GCGCGCTGGG GCCGCTGGTC
AAGGTGAACT GCTCGGCGCT GTCGGAACAT CTGCTGGAAA GCGAGCTTTT CGGCCACGTG
CGGGGGGCGT TTACCGGAGC CGTGCGCGAC AGGGTGGGGC GGTTCCAGTT GGCGCACGGG
GGCACCATCT TTCTGGACGA GATAGGCGAC GTCTCGTCCG CCGTGCAGCT TAAGCTGCTG
CGGGTGTTGC AGGAGCGCGA GTTCGAGCGG GTGGGCGACA CCCGCACCGT CAAGGTGGAC
GTGCGGGTCA TCGCCGCCAC CAACCGGCCC CTGGCCGACC TGGTGCGCTC CGGCAGGCTG
CGCGAAGACC TGTACTACCG GCTGCGGGTG GTGGAACTGC ATCTGCCCGC CCTGCGCGAC
CGGCGCTCGG ACATCCCCCT GCTGGTGGAC CACTTCGTGG AGCAGTTCAA CATCCATTTC
CACCGCCGGG TGGCCGGGGT TACCCCGGTT GCCCTGCAGG CGCTGATGGC GCATTCCTGG
CCCGGCAACG TGCGCGAGTT GCGCCACGCG CTGGAGCACG GCTTCATCCT GTCGCGCGGG
GATGTCATCG ACGTGGATGC CCTGCCGCCC GAGGTGCGTG CCGCCGTGGG CATGGCGGCC
ACCGCCGCGC CCGTGCTGCG CAGCATCGCC TGCGATACGG ACCTGCCGCA GCAGGGGGCG
GACGTTACAT GGGCCGGGGG GCGAGCTCGG GATCGGGCCG GGGACCGGAT CGGCGACGGG
GGCATGGACC ATGGTCTGGC GCGCCCCCCA CAGGGAGGCT GGCAAACCGG TGCCTCGCCT
TACGGCCAGG GCGCCAGGGC GCCAGTCGTT GGCGGTGGCG CGGACCATTC CGGCATCTAT
CCCGACGGTA CCCCCGTGCA CCTGACCGAG AGGGTGCGGG GACGGGAGGC GGCATCCCTC
GAACCGCCGG TATCGGGCGG CCCCGTTTCG TTGCCCACGC CAGCCATGCC GGCAGGGCCG
GCGGGCAGTG GCTATGGCGG CCAGGTTGGC GAAGACCCCG TACCCTGCGT CGCGGAAGCT
GGCCGCCGCC TGCGGCTGAC CCCCGAACTG CTGTCCGACG CCCTGCGCAG GGCCGGGAAC
AACAAGGCCC GCGCGGCACG GCTGCTGGGG ATCTCTCGCC AGACTGTGTA TCGCAAGCTC
GTGGAATTCG GCCTGGCCGA CGGACCGGAT GGCGGACCGG ATGGCGGACC GGACGGCGAG
CCGGATGATG CGCCGGGCGT GAGCGCCAAC GAAGCAGACG CGGCTGGCAC GTAG
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| Protein sequence | MTTRRASVSP FRPSCAATGT WWSPPPALDE ALHALDPANG GPPDLVITDI ILRGENGLDF
ARTVRERCPF VPVILLTGRP SVESAVRAVA EGAEQYLTKP VDKEQMLQAA RTALRHKALD
DERRALVVER ENLRVHLEAV FQAVPDVLVT VTPDLRIQRM NLAARELPGG ARDARQAAGR
RFDEALGLFA PLFRPVLDET LGARRASRRR RVSAQLTDGR EQVFEIEAAP LVGAGGEFLG
ALLVARDVTR LAGLEEALGQ RTGMNQIIGR SAPMSELFHL LDELAQTDTT VLITGESGTG
KELVAEALHR GGPRALGPLV KVNCSALSEH LLESELFGHV RGAFTGAVRD RVGRFQLAHG
GTIFLDEIGD VSSAVQLKLL RVLQEREFER VGDTRTVKVD VRVIAATNRP LADLVRSGRL
REDLYYRLRV VELHLPALRD RRSDIPLLVD HFVEQFNIHF HRRVAGVTPV ALQALMAHSW
PGNVRELRHA LEHGFILSRG DVIDVDALPP EVRAAVGMAA TAAPVLRSIA CDTDLPQQGA
DVTWAGGRAR DRAGDRIGDG GMDHGLARPP QGGWQTGASP YGQGARAPVV GGGADHSGIY
PDGTPVHLTE RVRGREAASL EPPVSGGPVS LPTPAMPAGP AGSGYGGQVG EDPVPCVAEA
GRRLRLTPEL LSDALRRAGN NKARAARLLG ISRQTVYRKL VEFGLADGPD GGPDGGPDGE
PDDAPGVSAN EADAAGT
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