Gene DvMF_2738 details

Gene Information

• Locus tag: DvMF_2738
• ID: 7174677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: -
• Start bp: 3463715
• End bp: 3465589
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 643541271
• Product: type II secretion system protein E
• Protein accession: YP_002437145
• Protein GI: 218887824
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4962] Flp pilus assembly protein, ATPase CpaF

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 82
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGACTGG CCGAACGACT GATGCGCACC ACGCGGCGGC AACCCGCCCC CGCGCTGCAT 
CTGGAACCCG TGGCGTCCGA GGATGCCCGT ACGGGCAACG CCCCCCATGG GACAGAGGAC 
GACGCACAGG CCCATGCCGA TGTCTACGGC CACCTGCAAC TCGATCCGGA CGGTCTGGAC 
CAGAACCAGG GCCAGGACCA GGGCCGGGGC GACGGCATGC CGCAGGCGCC GCGCCTTGGC 
GCCTCGGGCC TGAACGCCCG CAGCCACCTT TCCGCCGTTC CCCCCGCCGC CACGGTCGGC 
ATGGCCATCC AGCCCGACAC CGCACGCCTC GATGCGCCGG ACGAGGCCGA CACCGCGCCC 
ATTCCGCGCG TGCCGGTCAA CGACGCCACC CTGTTCCGCG CGCCGCGCCC CGAATCCGCA 
CCGGTGTCCG AATCCGCAAC GCTGGCCGCG CCCCGTGCCG ACGCCCCGGA AGCACAGCCC 
GCAGACGCGC AGGCCACCCA AGCGGGCCAA ACCGGAAAGT CCCGTCCGTC GGCACGACCC 
GCCGCCCGCC CCGCCAGCGC GGAGCAGGTA TGCGACGTGA CAACCCTGAC CCTGCACGGC 
GACCACTACT ACGAAATCCG CGCCCGCCTG CAGGACCGCC TGCTGGAGAT GATGGACCTG 
GCCGCCGCCG AATCGCTGCC GCCCGACAGG CTGGCCGCCG AAATTTCCCG CCTGGTGGAA 
AAGCTGCTGC GCGAGGAGTT CCGTCAGGCC CCCCTCAATG CGCAGGAACA GCGCCAGCTG 
GTGGAGGACA TCCGCGACGA GGTCATGGGC CTTGGCCCGC TGGAACCGCT GCTGCGCGAC 
CCCACGGTCA ACGACATACT GGTGAACAAC TACCGCATGG TCTACGTGGA ACGGCGCGGC 
AAGCTGATCC GGGTCAACAC CCGCTTCCTG GACGACGACC ACCTGCGCAA GATCATCGAC 
CGCATCGTGG CCCGCATAGG CCGCCGCGTG GACGAGGCAT CGCCCATGGT GGACGCCCGC 
CTGGCCGACG GTTCGCGCGT CAACGCCATC ATCCCGCCGC TGGCCCTGGA CGGCCCCAGC 
CTGTCCATCC GCCGCTTTTC CAAGGACCCG CTGGAACTGG AAGACCTGAT CCGCTTCGGC 
GCGCTGACCC CGGAAATGGG CGAGGTGCTG CGCGGCATCG TCAAGGCGCG GCTGAACATC 
ATCGTTTCCG GCGGCACCGG CTCGGGCAAG ACCACCATGC TCAACTGCCT GTCGCGCTTC 
GTGCCGCACG ACGAACGCAT CGTGACCATC GAGGACGCGG CGGAACTGCA ACTGAAGCAG 
GACCACGTGG TGCGGCTGGA AACCCGGCCC GCCAACATCG AAGGCCACGG CCAGGTCACC 
GCGCGCGACC TGGTCAAGAA CTGCCTGCGC ATGCGGCCCG ACCGCATCAT CGTGGGCGAA 
GTGCGCAGCG GCGAGGTGCT GGACATGCTG CAGGCCATGA ACACCGGCCA CGACGGCTCG 
CTGACCACCA TCCACGCCAA CACCCCGCGC GACTGCCTGA TGCGCCTGGA AACCATGGTG 
GCCATGGCCG GGCTGAACAT CGGCACCCTG TCGCTGAAGC GGTACATCGC GTCCGCCGTG 
GACGTGATCA TCCAGGTTTC GCGCCTGGCC GACGGCTCGC GCAAGATGAC CAGCCTTTCG 
GAAATCACCG GCATGGAAGG CGACGCCATC ACCATGCAGG ACATCTTCAC CTTCGAACAG 
ACCGGCGTGG ACGAGAACGG CAAGGTGCAG GGGCGGTTCC GCTCCGGCGG CATCCGGCCC 
CGCTTCGCCC CGCGCCTGGC CGCCATGGGC ATCGAGCTTG GCGGCGCACT GTTCGATCCC 
GGCTTGTCGC AGTAA 

 

Protein sequence

MRLAERLMRT TRRQPAPALH LEPVASEDAR TGNAPHGTED DAQAHADVYG HLQLDPDGLD 
QNQGQDQGRG DGMPQAPRLG ASGLNARSHL SAVPPAATVG MAIQPDTARL DAPDEADTAP 
IPRVPVNDAT LFRAPRPESA PVSESATLAA PRADAPEAQP ADAQATQAGQ TGKSRPSARP 
AARPASAEQV CDVTTLTLHG DHYYEIRARL QDRLLEMMDL AAAESLPPDR LAAEISRLVE 
KLLREEFRQA PLNAQEQRQL VEDIRDEVMG LGPLEPLLRD PTVNDILVNN YRMVYVERRG 
KLIRVNTRFL DDDHLRKIID RIVARIGRRV DEASPMVDAR LADGSRVNAI IPPLALDGPS 
LSIRRFSKDP LELEDLIRFG ALTPEMGEVL RGIVKARLNI IVSGGTGSGK TTMLNCLSRF 
VPHDERIVTI EDAAELQLKQ DHVVRLETRP ANIEGHGQVT ARDLVKNCLR MRPDRIIVGE 
VRSGEVLDML QAMNTGHDGS LTTIHANTPR DCLMRLETMV AMAGLNIGTL SLKRYIASAV 
DVIIQVSRLA DGSRKMTSLS EITGMEGDAI TMQDIFTFEQ TGVDENGKVQ GRFRSGGIRP 
RFAPRLAAMG IELGGALFDP GLSQ