| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2529 |
|---|
| Symbol | |
|---|
| ID | 7174465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 3188885 |
|---|
| End bp | 3191479 |
|---|
| Gene Length | 2595 bp |
|---|
| Protein Length | 864 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643541059 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_002436936 |
|---|
| Protein GI | 218887615 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCATG CCCCCATACG CCTTCCGCTT CGCTCTCCCC GCCGCCTGAC CATGCTGCTG
GCCCTGCTGG GCCTAGCCGC TCTTGCCGGG CTGGCCCCCG CGGGGTCCGG CCTGCCCGCC
CCGCGCGCCG CGCTGGCGGC CCAGGCAACG GCACAGGCCG CCGATGCCGC CCTGCCGGGC
GACACGCAGC AGGATGCACC GGACGGGCAG CAGGCCATGG ACATCATCTG GCAGACACGC
GGACAGGAAC TGTCCACCCT GGTGGAAGAA ACCGACCGCC TGCGCAAGGC GCTGCCGGAC
ATGGTGAAGG CGCTGGACAG CCAGGTGGCC GCCATGCAGC GCGACTACCA GCGCCTGTTC
GCCCTGTACC AGCTGAGCCG CAACCACCCC AGCGAAATGG CCGCCATCCG CCGCCAGATG
GCAGGCGTGC AGCGCACCCT GCAAGGACGG CTGGCCCCCA TGGAGGCCAC CGATGCCGCC
GTACGCCAGC GCCTGGACGA CTTCACCGCG CTGGACAAGG AATTGTCCGA GCATCTGGCC
ACGGAGCGTT CCAGCGACCT TTCAAAGGAT TTGTCCGAAT ACCTGGCCAA GCTCAACGAG
GGCCGCAAGA ACCTGACGAC GCTGCGCACC CGCCTTGCCC GCGCCCTGGA CCCCGGCCAG
GCCGTCAACG CAAAGCTGAC CCAAGCGCTG GAACAGATCG ACGCGCAGTT GCCCACGCTG
TGGCGCACCT ACTATCTGGT GGCCTCCAGT TCGCTGATGG ACCTTGGCGT ATGGCTGTCA
TTGCCCGCCA ACCTAGCCGC CTGGTCGGAC ACCACCGAGA TTCGCCTGGC CACCGAGTTT
CCGCAGTCCG CCCGTGACTG GGGCGCGCTG CTGCTGCGCT TTGCCTTTCT GGTCGTGCCG
CTGTTCCTGC TGGGCAGGCT GGCATTGCAG CGCGGCTGCC GGTTGCCGGG CGGCTGGGCC
GACAGCTGCC GCAATGTGGC CGCGCGCAGC TGGCCGTGGA TCGCCGTGGG CATTGCCCTG
CACTTCGCCT CCTGGGCGCG CGGCGGCGAG GTGTACCGGG CAGTGGTGGT GCCCGCGCAC
CTTCTGCTGC TGTGGGGCGA GCTGACCCTG GTATGGAGCC TGCGCGCCGC CGGTCTTGCC
GGTGTGCCGC AGCGCTCGCC CCTGTCTTTA CTGTTCGCAC CGGCGGCCAT CGGGGTGCTG
CTGCTGTTCC TGAACCCGCC CGCCGTGCTG CTGGCCCCGC TGTGGGCGCT GTGCATGGTG
GCGGTGCTGG CCGTGCGCGC CCGGCGCGGC AGGCCCCGTG TGCTGCCCCT GCTGGAAAAG
GTGCTGCTGG CCTGCGAACC CGCGCTGTGC ATCATCTCGC TGCTGGCGGC GGTGTTCGGC
TGGGCGCGGC TGGCCATCCC GTTCTTCCTG GTGGGGCTGG CCGTGGCCGT GGCCCTGCAA
CTGGGCGCGG TGCTGGTGGC CCTTGTGACC CTGCTGGCGG AACGCCTGCC GGAAAAGGGC
ATGCGCGCCC TGCTGCGCGG CCTGGTGCTG GGCCTTGGCG CCCCCGCCAT GTGGGTGGTG
GCCGCCGCCA CCCTGCTGCC GTGGATGTCC GCCTTCCCCG GCGGTCCGTA CATGATGCGC
CAGGCGCTGG AACTGAACGT CAACGTGGGG TCGGTGTCGT TCAACTCGTT GCGGGTGCTG
GGTCTGGTGC TGCTGTTCTA CCTTACCCGC TCGGCCATCG CCGTGGGCAC GTCGTTCCTC
GACAACCTGC CCGCGCGCCT GCCCCGCGTG GAGCGCGGGG TGATCCCGCC GTTGCAGACC
GGGCTGACCT ATGCCCTGTG GGCGCTGTTC GGCCTGGTGG TGCTGAACGC CCTGGGCGTC
AGCCTGACCA GCCTCACGGT CATCGCCGGT GGCCTCAGCG TGGGGTTGGG CTTCGGGTTG
CAGACCATCT TCAACAACTT CTTCAGCGGG CTGATCCTCA TTTTCGGCCG CTCGCTGCTG
GAGGGCGACA TCATCCAGAT CGGCGAGACG TGGGGCACGG TGCGCAAGAT CAGCATCCGC
TCCACTACCG TCGAAACCTT CGACAACGCC GTGATCTTCG TGCCCAACTC CGAATTCGTG
TCCAACCGGC TCACCAACTG GACCCGCAAC AGCATGCGCA TGCGCCGCGA CATCGCCATC
GGCGTGGCCT ACGGCTCGGA CATCGACAAG GTGACCGAAC TGCTGAAGCA GGCAGCGGAG
GACCACCCCC GGGTGATGCG CGACCCCGCG CCCAACGTGC TGTTCCAGGA CTTCGGCCCC
AGCAGCCTCG ACTTCGTGCT GCGGGTATGG GTGGACGACC TGAACCACGG TGTGTCAACC
GCGTCCGACC TGCGCCGGAC CATCGACCGC CTGTTCCGCG AGAACGCCAT AGAAATATCC
TTCCCGCAGA TGGACGTGCA CGTGCGCGGC ATAGAGGGGA TGCCCGTATC CACCGCAGCC
CTCGCGTCTC CAGATCCGGG CCCCGTCGAA GGCGCGGCAG CACCCCGGGA CACGACGGAA
AGCAGGACCG CCCCCACCTC CAGTTCCGGG AACCCCGGCC CCAAAAAGGA CGAAGACACC
CGCTCAGAGA CCTGA
|
|---|
| Protein sequence | MLHAPIRLPL RSPRRLTMLL ALLGLAALAG LAPAGSGLPA PRAALAAQAT AQAADAALPG
DTQQDAPDGQ QAMDIIWQTR GQELSTLVEE TDRLRKALPD MVKALDSQVA AMQRDYQRLF
ALYQLSRNHP SEMAAIRRQM AGVQRTLQGR LAPMEATDAA VRQRLDDFTA LDKELSEHLA
TERSSDLSKD LSEYLAKLNE GRKNLTTLRT RLARALDPGQ AVNAKLTQAL EQIDAQLPTL
WRTYYLVASS SLMDLGVWLS LPANLAAWSD TTEIRLATEF PQSARDWGAL LLRFAFLVVP
LFLLGRLALQ RGCRLPGGWA DSCRNVAARS WPWIAVGIAL HFASWARGGE VYRAVVVPAH
LLLLWGELTL VWSLRAAGLA GVPQRSPLSL LFAPAAIGVL LLFLNPPAVL LAPLWALCMV
AVLAVRARRG RPRVLPLLEK VLLACEPALC IISLLAAVFG WARLAIPFFL VGLAVAVALQ
LGAVLVALVT LLAERLPEKG MRALLRGLVL GLGAPAMWVV AAATLLPWMS AFPGGPYMMR
QALELNVNVG SVSFNSLRVL GLVLLFYLTR SAIAVGTSFL DNLPARLPRV ERGVIPPLQT
GLTYALWALF GLVVLNALGV SLTSLTVIAG GLSVGLGFGL QTIFNNFFSG LILIFGRSLL
EGDIIQIGET WGTVRKISIR STTVETFDNA VIFVPNSEFV SNRLTNWTRN SMRMRRDIAI
GVAYGSDIDK VTELLKQAAE DHPRVMRDPA PNVLFQDFGP SSLDFVLRVW VDDLNHGVST
ASDLRRTIDR LFRENAIEIS FPQMDVHVRG IEGMPVSTAA LASPDPGPVE GAAAPRDTTE
SRTAPTSSSG NPGPKKDEDT RSET
|
|---|
| |