| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2454 |
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| Symbol | |
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| ID | 7174390 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3096204 |
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| End bp | 3098195 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643540986 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002436863 |
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| Protein GI | 218887542 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 92 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGACC AGAAGGGACA GGACTCTGCG GAAAGCGTGT GGCACGCCGC AGCCACCGGA
CACGGCCAGG CGCTGGGTCC GGTGAACGGA CACGACCCGC GCTCCGGCGG CACGCCGCCT
GATTCCGGGC GGGATCCCCT GCCCGACCTG CCCCCGCCCG CCGCCCCCCT TTCCGCAGTG
GCTTCCGGCC ACACCCCGCC CGCCTCGCCG CAGATTTCCC CGGAACCCGT ACCGTACGAC
GACGTCCCCT CCCGCGCCCG CCACGCCGTG CCCTTTCCGC ATGCGCCGTC CCCCCTGCCC
GATGGCGACA CCGCGCAGAG CTTCCGCGTG CTGGCCGATC ATCTGGCCGA CTGGGAAAGC
TGGGAGGACG CCGACGGCAA GGTGGTGTTC GTCACCCCCG CCTGTCAGCG CATCACCGGC
TATTCCCTGG AATCGTTCCG CGCCAATGCC CGGTTCATCG AGGGCATCAT GCACCCCGAG
GACCTGCCCC TGTGGCGCAA GCACCGCGAG ATGGTGGCGT CCGGCGCCGA AATGGTCGAG
GTGGAGGTGC GCGTGCGCAC CCAGGATGGC CGCGAACGCT GGCTGGCCTG CACCAGCCGC
CGCCTGCACG ACGCCGAGGG CACGTCCCAG GGGGTGCGTT TCAGCGGGCG CGACGTCACC
GACCGCAAGA TCATGCTTAC CCAGATGAAG CACCAGGCCT GGCACGACCC GCTCACCGGG
CTGCCCAACC GCGCCCTGTG CCTGGACCGC ATCGACCGTT CGCTGCACCG CGCCCGGCGC
GGGGTCGACA ACGTGTGCGC CGTGGCCTTC CTGGACCTGG ACCGCTTCAA GGTGGTCAAC
GACTCCATGG GCAACTCCGC GGGCGACCAG GTGCTGCGCG AGGTGGCCCG GCGCCTGGCC
GAGAACACCC GCACCATCGA CACCGTATCG CGCCTTGGCA GCGATGAATT CATCCTGCTG
CTGGACGAGG TGCGCTCCGA GGAAGAGGCG CTGATCACGG TGCAGCGCAT CTGCACCTCG
CTCGAGCCGC CGCTGGAGGT GGCGGGCCGC CAGATCCGCA TTTCCGCCAG CGTGGGCGTG
GTGATGAACC GGGGCGGCGG CAATGCCGAC GAGATGCTGC GCAACGCCAA CATCGCCATG
CACCACGTGA AGGAACACGG CGGCGACGGC ATGGCGGTGT TCCAGCCTTC CATGCTCGAA
CAGGCCATGA ACCTGATGCA GCTGGAAATC GACCTGCACC GGGCGCTGGA CAACAACGAA
TTCTTCCTGG TCTACCAGCC CATCATGTCG CTGCACGACC GCAGGCTGAC CGGGTTCGAG
GCGCTGGTGC GCTGGAACCA CCCGGACCGG GGCATCGTGG GGCCGTCGGA ATTCATTCCC
GTCTCCGAAT CCACCGGGCA GATCCACCAG GTGGGCCACT GGGTGCTGGC AGAGGCGTGC
CGCGCCCTGG CCGCATGGCG CGAACAGCAG CCCTCCATGC GCAGCGTGAT CATGCACGTG
AACCTTTCGG CGCGGCAGCT TTCGCAGCCG GGCCTTGTGG AACAGGTGGC CGCCGTGCTG
CGCGAAACCG GCCTGCCCGC CAGGTGCCTG AAGCTGGAAG TGACCGAAAC CATGCTGATG
GAAAACCCGG ACTACGCCAA CCTGGTGCTG CGCAGGCTGA AGGAAATCGG CGTGCGGCTG
TGCATCGACG ACTTCGGCAC CGGGTATTCC TCGCTCAGTT ACCTGCAACA GTTCCCCATC
GACACCCTGA AGGTGGACCA GAGCTTCGTG GCGCGCATGT GCCGCGAGCC CGGGCACTTC
AAGATCGTGC AGGCCGTTGT GGCGCTGGCG CACAGTCTTG GCCTGGACGT GGTGGCCGAA
GGCGTGGAGG AAGAGGAACA GCGCATCATG CTGTCCGAAC TTTCGTGCGA GGGCGGGCAG
GGCTATCTGT TCTCGCGTCC GGTGCCGGGC GAGGACGTGC CCGGCCTGTT CGTCGACCGG
TCCAGACACT AG
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| Protein sequence | MSDQKGQDSA ESVWHAAATG HGQALGPVNG HDPRSGGTPP DSGRDPLPDL PPPAAPLSAV
ASGHTPPASP QISPEPVPYD DVPSRARHAV PFPHAPSPLP DGDTAQSFRV LADHLADWES
WEDADGKVVF VTPACQRITG YSLESFRANA RFIEGIMHPE DLPLWRKHRE MVASGAEMVE
VEVRVRTQDG RERWLACTSR RLHDAEGTSQ GVRFSGRDVT DRKIMLTQMK HQAWHDPLTG
LPNRALCLDR IDRSLHRARR GVDNVCAVAF LDLDRFKVVN DSMGNSAGDQ VLREVARRLA
ENTRTIDTVS RLGSDEFILL LDEVRSEEEA LITVQRICTS LEPPLEVAGR QIRISASVGV
VMNRGGGNAD EMLRNANIAM HHVKEHGGDG MAVFQPSMLE QAMNLMQLEI DLHRALDNNE
FFLVYQPIMS LHDRRLTGFE ALVRWNHPDR GIVGPSEFIP VSESTGQIHQ VGHWVLAEAC
RALAAWREQQ PSMRSVIMHV NLSARQLSQP GLVEQVAAVL RETGLPARCL KLEVTETMLM
ENPDYANLVL RRLKEIGVRL CIDDFGTGYS SLSYLQQFPI DTLKVDQSFV ARMCREPGHF
KIVQAVVALA HSLGLDVVAE GVEEEEQRIM LSELSCEGGQ GYLFSRPVPG EDVPGLFVDR
SRH
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