| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2426 |
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| Symbol | |
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| ID | 7174360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 3062464 |
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| End bp | 3064464 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643540956 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_002436835 |
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| Protein GI | 218887514 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 84 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCGATG CGCTGCCGAC CCTTGCCCTG CTGCTGTGCC TGCTGGTGGC GGTTACGCCC
TGCATGGCCG CGCCCGCCGC GTCTCCCGTA TCTGGCGTAT CTGGCGTATC TGGCGGCTCT
GGCGGGTTCG TGGGGGCGTA CACCCACTAT TCCGAGCAGG AGGACCTTAC CGTCCTGCTC
ATGGATTTCG CCCGTTCGCA GGGGCTTGGG GCGTCGTTCT CGCCCGGCGT CACCGGCACG
GTGAGCGGCA GGTTCGACGC GGTGCCCCCG GAAAAGTTCC TGCAGGGCAT GCGGGCCGCC
TTCGGCGTGC TGTGGTACCG GGTGGGCGCC ACGCTGAACT TCTACAGCGA GGCGGAAACC
AGCCGCATCT TCATTTCGCC CCGGGTCATG AGCGCCGAGG CGTTGTATCA GGCGCTGAAG
CAGTCGTCGG TGCTGTCGCC GCAACTGCCC GCCGACCTCA TGCCCGGCGG GGGCATGATC
GTGGTGGCCG GGCCGCAGGG GTATCTGGAC CAGGTTTCCG CCGCCGTGTC CGCCTTCGAG
GAAGCGCAGA CCAGCAACTT CGGGATGCGG GTCTTTCCGC TCAAGTACGC CTGGGCCGAA
GACATTTCGG TCAACAGCAT GGACAAGACG GTGACCCTGC CGGGTGTGGC CAGCATCCTG
CGGGCCATGG TCACCGGTTC GCCCGCCAGC GCCTCCCGCG TCACGCAGGA ACCGGCCACG
GTGGACAAGC TTTCCGGCAC CGGCCTGGTG GCGCAGGGGC GGCAGCAGGC CCAGCCCCAG
CAATCCCAGG CCCCGCAGGG GCAGCAGGGG GCGCAGCAGC CAGCCCAGGC CAGGGGGCAG
CAGGTCAGCA TCATGGCCGA CCCGCGCGTC AACGCCGTCA TCGTGCATGA CGCCGTGTAC
CGCATGCCCT ACTACGAATC GGTCATCGGC GACCTGGACA AGCCGGTGGA ACTGGTGGAA
ATCCACGCCG CCATCGTGGA CATCGACAGC GACTACAAGC GCGACCTTGG CGTGACGTAC
CAGGGCACGG CGGGCAGCGG ACAGCGCTGG GCGGGCGGCG GCGACTTTTC CACCGGCACG
GACGCCTTTC CCACCCTGCC CAGCCCCGGC AAGCCCCTGG GCAACGGCCT TACCCTGTCC
ACCATCTACA CCATGGGCTC CGACTACTTC CTCGCCCAGG TCACCGCGCT GGAAAAGAAC
GGCGAGGCCC GCATGCTGGG GCGCCCCTCT GTGCTCACCG TGGACAACGT GCAGGCCACC
CTGGAAAACA CCAGCACCTA CTACATAGAG GTGCAGGGCT ACCAGGCCGT GGACCTGTTC
AAGGTGGAGG CGGGTACCGT GCTGCGGGTC ACCCCGCACA TCATCCGCAA CGAGGACGGC
GGGCAGTCCA TCAAGCTGGT GGTCAGCGTG CAGGACGACC AGAACGACAA CAGTTCCGCC
ACGAGCACGT CCAATTCCAC CGCCATACCG CCGGTCAAGC AGACCAAGAT CAATACCCAG
GCCATCGTGG GGGGCGGCCA AAGCCTGCTC ATCGGCGGCT ACTACTACGA GCAGAAGTCC
ACCACCGACA CGGGCATTCC CATCCTGATG GACATTCCCG TGCTGGGGCA CCTGTTCAAG
ACCAATTCCA AGACCAGCAA GCGCATGGAA CGGCTGATCC TGATCACCCC CAAGGTGGTC
CGGCTTAACG AACTGCCCGC CACGCCGGAA CGGGTGGACG ATCCTTCGTT CCACCGCTCG
GCCACGCAGG GCGACTACAA CGAGAAGGTG CCCGCGCCCG CCCCGCGCCG CAGCGGCGGA
TGCACCCGCA GCGTGACCAC GGTGGACCCC GCGGAGCCTG CCGCGCCCGG TTCCTCGCCC
GCTGCTCCGG CCAAGGCTCC GGCAGAGTCG CAGCTGCGCA GCCAGATGGT GCCGGGATAT
CCGGCGGCGT CTGAAACCGC CGTGCCCATC CTGCCTATTG TGCCCATCGG GCCCATGACG
GACGCGGGGG GGCGGGGATG A
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| Protein sequence | MRDALPTLAL LLCLLVAVTP CMAAPAASPV SGVSGVSGGS GGFVGAYTHY SEQEDLTVLL
MDFARSQGLG ASFSPGVTGT VSGRFDAVPP EKFLQGMRAA FGVLWYRVGA TLNFYSEAET
SRIFISPRVM SAEALYQALK QSSVLSPQLP ADLMPGGGMI VVAGPQGYLD QVSAAVSAFE
EAQTSNFGMR VFPLKYAWAE DISVNSMDKT VTLPGVASIL RAMVTGSPAS ASRVTQEPAT
VDKLSGTGLV AQGRQQAQPQ QSQAPQGQQG AQQPAQARGQ QVSIMADPRV NAVIVHDAVY
RMPYYESVIG DLDKPVELVE IHAAIVDIDS DYKRDLGVTY QGTAGSGQRW AGGGDFSTGT
DAFPTLPSPG KPLGNGLTLS TIYTMGSDYF LAQVTALEKN GEARMLGRPS VLTVDNVQAT
LENTSTYYIE VQGYQAVDLF KVEAGTVLRV TPHIIRNEDG GQSIKLVVSV QDDQNDNSSA
TSTSNSTAIP PVKQTKINTQ AIVGGGQSLL IGGYYYEQKS TTDTGIPILM DIPVLGHLFK
TNSKTSKRME RLILITPKVV RLNELPATPE RVDDPSFHRS ATQGDYNEKV PAPAPRRSGG
CTRSVTTVDP AEPAAPGSSP AAPAKAPAES QLRSQMVPGY PAASETAVPI LPIVPIGPMT
DAGGRG
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