| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2412 |
|---|
| Symbol | |
|---|
| ID | 7174346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 3051233 |
|---|
| End bp | 3052273 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643540942 |
|---|
| Product | type III secretion protein, YscU/HrpY family |
|---|
| Protein accession | YP_002436821 |
|---|
| Protein GI | 218887500 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
|---|
| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACA AGACCGAACA GCCAACACCC AAACGCCTGC GCGAGGCGCG CGAAAAGGGC
GACATCTGCA AGAGCCAGGA CGTGGGCTCC GCCCTTACCG TGCTGGCCGT GGGGGCGTAC
CTTGCCATCA AGGGCGGCGA CATCTTCGCC GAGATCATGG CCGTCACCGA GCTTTCCATG
CGCCAGATGT CCCTGCCCTT CGACCAGGCG CTGCCGCTGC TGGCCACGGC GGTGACGCGG
GGGGCCATCG GCATCGTGCT GCCGGTGGTG GGGCTGGCCA TGTGCGTGGG CCTGCTGGCC
AATCTGGCCC AGACGGGGGT GCTGTTCGCG CTCAAGGCGG CCATGCCCAA GCTCGAGAAC
ATGAGCCCCG GCAAATGGTT CAAGAAGGTC TTTTCGGTGC GCAACGCCGT GGAGATGCTG
AAGAACTGCA TCAAGGTGGC CGTGCTTGGC TGGGCCGTGT GGAAGGTGCT TTCCGACCAC
ATGCGCGGCC TGTTCGCCAT ACCCGACGGC GGCATCGGCG GGCTGCTGAC CGTGCTTGGC
ATCACCGCGC GCGACATGGT GCTGACTTCC GCCGCCGTGT TCTGCGTCAT TGCCGCGCTG
GACTACATGT ACCAGCGCTG GCAGTACAAC AAGCAGCACA TGATGACCAA GGACGAGGTC
AAGCGCGAGT ACAAGGAAAT GGAGGGCGAT CCGCACATCA AGGGCAAGCG CAAGCAGCTG
CACCAGGAAA TGATCACCCA GAACACTCTC TCCAACGTCC GCAAGGCAAA GGTCATCGTG
ACGAACCCCA CCCACTACGC CGTGGCCCTG GACTACGAGA AGGACCGCAC CCCGCTGCCC
GTCATACTGG CCAAGGGCGA AGGCCTGCTG GCCAAACGCA TGGTGGAGAT CGCCCGCGAG
GAAGGCATAC CCGTGATGCA GAACGTGCCG TTGGCGCGCA GCCTGTTCGC CGAAGGCACC
GAGAACGCCT ACATCCCCAA GGACCTCATC GGGCCCGTGG CCGAAGTGCT GCGCTGGGTG
CAGTCGTTGC AGGGGCGCTA G
|
|---|
| Protein sequence | MSDKTEQPTP KRLREAREKG DICKSQDVGS ALTVLAVGAY LAIKGGDIFA EIMAVTELSM
RQMSLPFDQA LPLLATAVTR GAIGIVLPVV GLAMCVGLLA NLAQTGVLFA LKAAMPKLEN
MSPGKWFKKV FSVRNAVEML KNCIKVAVLG WAVWKVLSDH MRGLFAIPDG GIGGLLTVLG
ITARDMVLTS AAVFCVIAAL DYMYQRWQYN KQHMMTKDEV KREYKEMEGD PHIKGKRKQL
HQEMITQNTL SNVRKAKVIV TNPTHYAVAL DYEKDRTPLP VILAKGEGLL AKRMVEIARE
EGIPVMQNVP LARSLFAEGT ENAYIPKDLI GPVAEVLRWV QSLQGR
|
|---|
| |