| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2350 |
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| Symbol | |
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| ID | 7174284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2960259 |
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| End bp | 2963261 |
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| Gene Length | 3003 bp |
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| Protein Length | 1000 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643540880 |
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| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
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| Protein accession | YP_002436759 |
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| Protein GI | 218887438 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 0.521127 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTCA TCAGGATCGG TGAGCGGACA CGGAACCGCT GGCAGCTGTC GCTGGACACT
CTGGCGCGGC TGCTGGGCAT TGGTGTTGCC GCCATCATGC GTCGGCACCC GGGGGGGCTT
TCGGTGCTGC TGTCCAGCAA CACGGCGGGC AACCCGCTGG TGCCGGGCAT GCGCATCGCC
ACCATGGCAG GCGGCACCTA TTGCGACGCG GTCATAGAGG CTGGCAGGCC GGTCCACGTG
CAAAACGCCC TGGACGACCC GCTCTGGCGC GACAGCCCCA TGGTGCGGGC GGGCTTTGTC
GCCTATCTGG GCTACCCCCT GCTGCTGCCC GACGGGCAGC TGTTCGGCAC GCTGTGCCTT
CTGGAAACGC GCCAGTGGCT GATTTCCGGG ATGCATCGGG GCATCGTGGA CGATTTTCAC
GGCCAGGTGG AGGAAACCCT GGCCCTGGCC TACGAGAATG CCCTGTTCGG CGCGCAGCAG
GATACCCTGC CTTCCGCCGC GCTGACCGTG GACATCCGCG GCATGGTGGC GCGGGTCAAC
CGCCGTTTTC CGAAGGTATG GGGCATCGAT GTGGACGCCT CCAGCCTGGT GGGCCGCCCG
CTGGCCGAGG TGCGCACCCT GCTGGCGGAC CGCCTGCGTG ATTCCGCCGC CATCGCCGGG
GTGCTGCCCG CAGACGAGGT GGGGCTGGCC GCAGAACCCT TCACGCTGGC CGCACAGGCC
GTGCCTTCCG CATCGGTCCC TTCGGCCCGG ATGCCGGACG GTACCGGCGG CTATCCGGTG
CTGCTGGCCG ATGGCCGCGT GCTGCGGCGC ACCTACCGGA CCCTGCGCGG CGAGTACGGG
CGGACCTGGG GCAGCGTGTG GCTGTTCGAG GACGTCACCG CAGAGGTGCG CGCCCAGGAG
GCCCTGACGC GCAGCGAGGA ACGGCTGAAG CTGGCCCTGG ACGCTGCCAG CGAAGCCCAC
TGGGACTGGA ACTTCGAGAC CGGCGAACTG TATTGCAGCC CCCGCTACTA CGAGATGCTG
GGGTACGTGC CCGGTGAATT CGAATGTACC CACGATGCCC TGCGCGACCT GATGCACCCC
GACGACCTGT GCGAGGTCAC CACTGCCCTG TGCATGCCGG ACCCGGCGGT GTCGCACGCG
GTGGAAGCCT GCGGCGTGGG GCAGTTCGAG GTGCAGTTCC GCCTGCGCGC CAAGGGGGGC
GACTGGAAGT GGATGCTGGC GCGGGGCCGC GTGCTGGCCC GGCGCGAGGA CGGTTCGCCC
GCGCGGGTGG TGGGCACGCA CATGGACATC ACCGCAGCGG TCAGCCAGCG GCTGGCCCTG
GGCCGCAGCG AGGAACTGTT CCGGGGCATC TTCAGCACCG CCTCGGTGGG CATCGTGCTG
CTGGACCGCT TCGGCCTGCT GGTACGGGTC AACGATGCCT GCGCGCGCAT GCTGGGCTAT
GCCACCGACG AGATGCGCGG CCAGCATTTC AGCCGGTTCA TGCACGACGA CGAGACCACC
CTGGCCGCCA CCACCCTGAC CAGCCTGCTG GACCGCACCC AGTCCACCAG CCGCCTGCAA
CACCGCCTGC GCGGCAAGGA TGGCAGCTAC CTGTGGACCG ACATCAGCGC CTCGCCGCTG
GAAGGGCCCA ACGGCGAGGT GGAAGCGGCC CTGGCCATCA TCGTGGACAT CAACGAGCAG
CGCACCGCCC AGCAGGCTCA GGAAGACAGC GAGCGGCGCT ACCGCGCCCT GTTCGAGAAC
GCCCAGGTGG GCATTTTCCG CACGCGCATC TCCGACGGCA GATTCATGGA GGCCAACAGC
CGGATCATCG AAATGTACGG TTGGCCGGAC CGCGCGGAAT TCATGGAAAA GATGCGCTCC
ACCGAATGGT ACGTGGACTC CGAGGCGCGT GGCCGCATGG TGGGCACGCT GCTGCGCCGG
GGCGAGTTCC GCAACATCGA GGTGGAAATG CGCCGCCGTG ACGGCAGCAC GGTGTGGTTC
GAGTATTCCG GCAAGCTGGA CGGCGACACC ATCATCGGGG TGGCTCAGGA CGTTACCCAG
CGCAGGGCGG CGGAAGCAGC GCGCCAGCGG TCCGAGGCCC ACTACCGGCT GCTGTTCGAG
GCAGCCGCCG ACGCCATCTT CCTGCATGAC CCCGAGGGGA AATTCCTGGA CGTGAACGAG
GTGGCCTGCC GCCGTCTGGG CTACACCCGG CGCGAACTTC TGGCCATGAC CCCGCGCGAG
CTGGACGCGG AGGAATTCGC CGAACAGGTG GGCGAGCGCA TCCGACGGCT GCGCGAGGAA
GGGTCGCTGA CCTTCGAATC GGCCCACCGT ACCCGCAACG GCACGGTCCT GCCCGTGGAA
ATCCACGCCA AGCTGCTCGA TTTCGACGGC AAGCCCGTGG TGCTCAGCAT CGCGCGGGAC
ATCACCGACC GCAAGCGGCT GGAACAGGCC CTGATGCGCG AGGCCACCAC CGACCCGCTG
ACGGGCATCC GCAACCGGCG GCAGTTCTTC GTGGACGCGG AACGCGAAAT GGGCCGGGCC
GTGCGCTACG GACGACCGCT GGCCGTGCTG ATGCTGGACC TGGACCGCTT CAAGCGCGTC
AACGACCGCT TCGGCCACCA CGCGGGCGAT GCCGTGTTGA TGGGCTGCGT GCAGGCCTGC
CAGCAGGCCC TGCGCGAAAC CGACATATTG GGGCGGCTGG GCGGCGAGGA ATTCGCGGCG
GTGCTGCTGG AAACGGACCT GGACGATGCG CTGGCCGCCG CCGAGCGGCT GCGACGGGCC
GTGGAGGAAA TGGACGTGCC GTTCAGCGGG CAGCGGTTGC GCTGCACGGT GAGCATCGGC
CTGGCCCTGC GCGGGCCGGG GGACGGCGCG CTGGACGACA TCCTGCGCCG GGCGGATTCG
GCGCTGTACG CCGCCAAGGA GGCGGGCCGC AACCGGGTGA TGCTGGCGCG CGCCGTCAAC
AGCGGGGCGG AGGACCAGAA CCGCCGCTGG AGCAGCGGCG GGGTGCTGCG CGGCGAGAGC
TGA
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| Protein sequence | MDFIRIGERT RNRWQLSLDT LARLLGIGVA AIMRRHPGGL SVLLSSNTAG NPLVPGMRIA
TMAGGTYCDA VIEAGRPVHV QNALDDPLWR DSPMVRAGFV AYLGYPLLLP DGQLFGTLCL
LETRQWLISG MHRGIVDDFH GQVEETLALA YENALFGAQQ DTLPSAALTV DIRGMVARVN
RRFPKVWGID VDASSLVGRP LAEVRTLLAD RLRDSAAIAG VLPADEVGLA AEPFTLAAQA
VPSASVPSAR MPDGTGGYPV LLADGRVLRR TYRTLRGEYG RTWGSVWLFE DVTAEVRAQE
ALTRSEERLK LALDAASEAH WDWNFETGEL YCSPRYYEML GYVPGEFECT HDALRDLMHP
DDLCEVTTAL CMPDPAVSHA VEACGVGQFE VQFRLRAKGG DWKWMLARGR VLARREDGSP
ARVVGTHMDI TAAVSQRLAL GRSEELFRGI FSTASVGIVL LDRFGLLVRV NDACARMLGY
ATDEMRGQHF SRFMHDDETT LAATTLTSLL DRTQSTSRLQ HRLRGKDGSY LWTDISASPL
EGPNGEVEAA LAIIVDINEQ RTAQQAQEDS ERRYRALFEN AQVGIFRTRI SDGRFMEANS
RIIEMYGWPD RAEFMEKMRS TEWYVDSEAR GRMVGTLLRR GEFRNIEVEM RRRDGSTVWF
EYSGKLDGDT IIGVAQDVTQ RRAAEAARQR SEAHYRLLFE AAADAIFLHD PEGKFLDVNE
VACRRLGYTR RELLAMTPRE LDAEEFAEQV GERIRRLREE GSLTFESAHR TRNGTVLPVE
IHAKLLDFDG KPVVLSIARD ITDRKRLEQA LMREATTDPL TGIRNRRQFF VDAEREMGRA
VRYGRPLAVL MLDLDRFKRV NDRFGHHAGD AVLMGCVQAC QQALRETDIL GRLGGEEFAA
VLLETDLDDA LAAAERLRRA VEEMDVPFSG QRLRCTVSIG LALRGPGDGA LDDILRRADS
ALYAAKEAGR NRVMLARAVN SGAEDQNRRW SSGGVLRGES
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