| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2300 |
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| Symbol | |
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| ID | 7174233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2888613 |
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| End bp | 2891423 |
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| Gene Length | 2811 bp |
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| Protein Length | 936 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643540829 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002436709 |
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| Protein GI | 218887388 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 86 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCCGG AAGGCCGGTC CCCATTTGTC CCGGTGGCTG GCGGTCAGCC CGCAGACAGG
GGGGGCCAGC CAGACCCGTC CGGCCGCGTT CACGCTTCAG GTCCGGGTAC GCCGACCCCG
GAGTGGTTGA ACCCTCCGGA AGCGCCGAAA TCGCCGGAAC AGCGCGACGG GGCCGGTACA
TCCGGTACTG CCCGTTCGTC CCATCCGCCG CGCCCGGGTT TCGGCATCGC CTTCAAGGCG
GGCGGGCTGG CCTTTGTGGC GGGGGTGATG ATCATCGCGG CCATTCTGGG CATGATCATC
CCCTACCAGC AGGGGGTGCT GCGCCGGGGC ATGGAATCGC AGGCCGACAA GCTGGCCTCT
TCGGTGGCGG AAGTGGCCGC CAGCGCCCTG GCGGCGCAGG ACTACGCCGC CCTGGTGGAT
CACTGCACCG GCGTGCTGCA ACGGCAGTCG GGGCTGGAAT ACATCGTGGT CACCCGCATG
GACGGATCGT CGCTGGCGTT CCGGCGTGGC GGCTGGGGCT TTCAGGCTGC TCCGCAGGCC
TCTGCCGGTG TTGCCGCCAA AACGGAGCCG TCCAGCGGCT TTCGCCTGGG GCTGCCCCCC
GGCCTTGACG TTCCGGATGC GCCGGGCACC GCCAAATCCC CGGCATCTCC CAACCCCGCC
GATGCGGTCA GCCCCGGCAC GTTTCCCGGT GCTTTCACTG GCGGGGCCGC CGACGGGCCG
GAAGTATACC ACCACGTGCT GCCCGTGGAA CGGGGGGGCA TTTCCATCTG CACCGTGTCC
GTGGGCCTTG CCCTGGACGG CTACCGGGCA GAGCAGCGCG CCGCGTGGTG GCACATCGGC
GCGCTGACGG CCATGGCCGT GCTGGTGGCG CTGGCCACGG CGCTGCTGCT GTCGCGCACG
GTGACCCGCA CCGTGCTGCG CCTGTCCGGC TGGGTGCGTT CCATCGGCCC CGGCAACATG
GGCCAGCGCA TCCGGATCGA CACCGGCGAC GAACTGGAGG GGCTGGCCAA CGCCTTCAAC
GGCATGCTCG ACCTGCTGGA GGCCTCGCAG CGGGAACTGA ACGAGGCCCA TCGCGAACTG
GAGCGCCGCG TGCGCGACCG CACCGCCCAA CTGTGCGACG CCAACGCCAA GCTGCACCTG
ATGGGCGAGG TGTTCACCCA CGCGGTGGAG GGCATCTTCA TCACCGACAG CGCGGGCACG
GTGGTGGCCG TGAACCCGGC CTTCGAACGC ATCACCGGTG TGGACGCGCA GTCCATGGTG
GGGCGCCTGT CCCCGGCCCT GGGCATGGTG CCCGTTAACG GCACCCGCAG CGTGTGGGAC
GAGATGCTGG AGCACGGATC GTGGATCGGC GAGACGCGCG GGCCGCACCG CGACGGCTGG
CAGATTCCGC AGTGGCTGAG CCTGGTGTCC ATCCGCGACG AGACCGGGGT GATCCTGAAC
TGCGTGGGGG TGTTCTCGGA CATCACCGAC ATCAAGCAGA AGGAAGCGCA GATTACCCAT
CAGGCCAACC ACGACGACCT GACCGGCCTG CCCAATCGCA AGCACATCTT CGAACTGCTG
CACGACGCCA TCGCCCGGGC CTCCGTGCGC GGGCAGAAGC TGGCCGTGGT GTTCATCGAC
ATGGACGGCT TCAAGTTCAT CAACGATTCG TACGATCACG CCACCGGCGA CCAGTTGCTG
TGCGACGTGG CCCGGCGGCT GCGCGCGGCG CTGCGGCCCG GCGACATGCT GGGGCGGCTG
GGCGGCGACG AATTCGTGGC GGCGGTGGGC GGCATCAGCG ACAAGGGCCA TCTGGACGGC
ATCATGCGGC GGCTGTTCGA AACCTTTGCC GAGCCGTTCG AATACGGCGG CATGGGCTTT
TCGGTCACGG CCAGCTTCGG CGTGTCGGTG TATCCCGACG ACGGCGATTC GGCCAACGCC
CTGCTGTCGC GCGCGGACAT CGCCATGTAC CGCGCGAAGG ACATGGGCAA GAACGCCATC
GCCGTGTTCT GCGAGGAACA GTGCCTGGAA TTCACCCGGC GCTACCGCAT GGACCAGGAG
ATCAAGGCGG CCATTGCCGG GCGCGAATTC CGGCTGGTGT ACCAGCCCAT TGCCGACGCG
CGCACCCTGC GGGTGCGCAA GGTGGAGGCG TTGCTGCGCT GGGAGCGCGA CGGCGCGGTG
GTGGCCCCGC CATCCGTGTT CATCCCCGTG GCGGAAAGCT CCAACGCCAT CCGCGAGATA
ACCCGGCTGG TGGTGGAAAT GGCCTGCGTC CAGCACGCCG CGTGGCGGCT GGAGGGGCTG
ACCCTGCCGG TGGCGGTGAA CATCTCGTCG CGCTGCCTGA ACAGCGACGA GACCATCAGC
CACATAGCCG CCTGCCTGAA CGCCTACGAC GTGCCCCCGG ATGCGCTGGA GGTGGAGATT
ACCGAAACCT CGCTGATGCA GAACTACGAG CGCGGCAACG CCATGCTGTG CACCCTGCGC
GACCTTGGGG TGCGCGTTTC GCTGGACGAC TTCGGCACCG GGTATTCGTC GTTGCAGTAT
CTTGCGCGCA TGCCCATCCA CGCCCTGAAG ATAGACCGCA CCTTCGTGCA GGAACTGTTG
GAGGAAGGCG GCAGCCTGGA AATCGTGGAG ACCATCCTGG GGCTGGCCCG CAGCCTGCGT
CTGGCCACGG TGGCCGAGGG CGTGGAGACG GCGGCCCAGC TTTCCGCCCT GCGCGGCATG
GGCGTGGACT ATCTGCAGGG CTACTGCCTT GGCCGTCCGC TGCCTGCCGA CGACATCCTG
ACCCTGTGCC GCAGAGGCAT GCGGCTGGTG CCCAGGGACG TGGAACGGTA G
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| Protein sequence | MRPEGRSPFV PVAGGQPADR GGQPDPSGRV HASGPGTPTP EWLNPPEAPK SPEQRDGAGT
SGTARSSHPP RPGFGIAFKA GGLAFVAGVM IIAAILGMII PYQQGVLRRG MESQADKLAS
SVAEVAASAL AAQDYAALVD HCTGVLQRQS GLEYIVVTRM DGSSLAFRRG GWGFQAAPQA
SAGVAAKTEP SSGFRLGLPP GLDVPDAPGT AKSPASPNPA DAVSPGTFPG AFTGGAADGP
EVYHHVLPVE RGGISICTVS VGLALDGYRA EQRAAWWHIG ALTAMAVLVA LATALLLSRT
VTRTVLRLSG WVRSIGPGNM GQRIRIDTGD ELEGLANAFN GMLDLLEASQ RELNEAHREL
ERRVRDRTAQ LCDANAKLHL MGEVFTHAVE GIFITDSAGT VVAVNPAFER ITGVDAQSMV
GRLSPALGMV PVNGTRSVWD EMLEHGSWIG ETRGPHRDGW QIPQWLSLVS IRDETGVILN
CVGVFSDITD IKQKEAQITH QANHDDLTGL PNRKHIFELL HDAIARASVR GQKLAVVFID
MDGFKFINDS YDHATGDQLL CDVARRLRAA LRPGDMLGRL GGDEFVAAVG GISDKGHLDG
IMRRLFETFA EPFEYGGMGF SVTASFGVSV YPDDGDSANA LLSRADIAMY RAKDMGKNAI
AVFCEEQCLE FTRRYRMDQE IKAAIAGREF RLVYQPIADA RTLRVRKVEA LLRWERDGAV
VAPPSVFIPV AESSNAIREI TRLVVEMACV QHAAWRLEGL TLPVAVNISS RCLNSDETIS
HIAACLNAYD VPPDALEVEI TETSLMQNYE RGNAMLCTLR DLGVRVSLDD FGTGYSSLQY
LARMPIHALK IDRTFVQELL EEGGSLEIVE TILGLARSLR LATVAEGVET AAQLSALRGM
GVDYLQGYCL GRPLPADDIL TLCRRGMRLV PRDVER
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