| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2069 |
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| Symbol | |
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| ID | 7173988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2567011 |
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| End bp | 2569287 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643540586 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_002436480 |
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| Protein GI | 218887159 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAAGG ACCTGATCAT CGTCGAATCC CCCGCCAAGG TGAAGACCAT CAAGAAATTC
CTTGGCGGCA ATTACGCCGT GCATGCCAGC GTGGGCCACG TGCGCGACCT GCCCACCAGC
GAACTGGGCG TCGACGAGGC CAACGGCTTT GCCCCCCGCT ACCAGGTCAT CGACGGCAAG
CAGAAGGTGG TTTCCGCCCT CAAGGAAGCC GCCGCCAAGG CCGACAACGT GTACCTGGCG
CCCGACCCCG ACCGCGAAGG CGAGGCCATT GCCTGGCACG TGGCGGAACT GATCCGCGAC
AAGAACACCA ACATCCAGCG CATCCAGTTC AACGAAATCA CCGCCCGCGC GGTAAAGGAA
GCGCTGGAGA ACCCGCGCGA ACTGAACCGC AACCTGTTCG ACGCCCAGCA GGCCCGCCGC
GTGCTGGACC GTCTGGTGGG CTACAAGCTT TCCCCCCTGC TGTGGAAGAA GGTGAAGCGC
GGCATTTCCG CCGGGCGCGT GCAGTCCGTG GCCCTGCGCC TGATCGTGGA CCGCGAGAAC
GAGCGCCGCG CCTTCAACCC GGAAGAATAC TGGCTGTTCC GCGCGCGCCT GGCCGGGGCC
ACTCCGCCCC CCTTCCGGGC CGACCTGCAC AAGCTGCACG GCAAGAAGCC CGCCATCGGC
AGCGCGGCGG ACGCCGCCGC CGTGGAAGCC TCCATGCAGG GCCAGCCCTT CGTCATTACC
GGCATCGACG AAAAGGAACG CCAGCGCCAG CCGCAGCCCC CGTTCATCAC CTCCACGCTG
CAACAGTCGG CCAGCCAGCG GTTGGGGTAT TCGGCCAAGC GCACCATGAA CATCGCCCAG
CGCCTGTACG AAGGCGTGGA ACTGGGCGAG GCGGGCACCG TGGCCCTGAT CACCTACATG
CGTACCGACT CCGTCCGCAT TGCGGACGAG GCCCGCGACG CCGCGCGCGA GTTCATCGCC
GCCACCTGGG GGGGCGACCA CCTGCCCGCC AAGGCCCGCC AGTTCAAGAC CAAGGGCGGC
GCACAGGACG CGCACGAAGC CATCCGGCCC GTTGACGTGA GCGTGACGCC GGATTCGGTG
CGCCACCTGC TGCCGCCGGA CCAGTTCCAG CTGTACCGGC TGGTGTGGCA GCGCTTTGTC
GCCTCGCAGA TGGCGGCGGC GCGCTTTCAC GACACCACGG TGACCATCGC CTGCGGCCCC
GTCGAATGGC GCGCCAAGGG CGAACGGCTG CTGTTCCCCG GCTTTCTGGC CGCGTCGCCC
CAGAAGGAGG CGCAGGACGG CGAGGAAGTG GCCGAAGGCG ACCTGCCCAA GCTTTCCGTG
GGCGAGGAAC TGACCGCCCT TTCCGTGGAA AAGGAACAGA AGTTCACCCA GCCCCCGGCC
CGCTACACCG AAGCATCGCT GGTGCGCGAA CTGGAAGAGC GCGGCATAGG CCGCCCGTCC
ACCTACGCGG CCATCATTTC CACCCTGCTC GACCGCGACT ACGCCCGGCT GGAGGAAAAG
CACTTCGCCC CCACCGACCT TGGCGCGGTG GTCTGCGACC TGCTGGCCGG ACACTTCACC
ACCCTGATGG ACGTGGACTT CACCGCGCAG ATGGAAGGTT CGCTGGACAA GGTGGCCGAA
GGCGAGCTGG ACTGGGTGAA GCTGCTGGAA GACTTCACCG GCGGGTTCAA CCCGGTGCTG
GAACGCGCCG CCCAGGCCAT GGACACCGTG AAGGGCGGCC TGCCCAGCGG CATAGACTGC
GAACTGTGCG GCAAGCCCAT GGTCATCAAG TTCGGCAAGG CGGGCACCTT CCTGGCCTGC
TCCGGCTATC CGGCCTGCCG CAACACCAAG AACTTCACCC GCGACGAAAA GGGCAACATC
CAGGTCGAGC AGAAACTGCG CGAGGAACCG GAAAAGGTGG GCACCTGTCC GCAATGCGGT
GGCGACCTGG TACTGAAGAA GGCCCGCACC GGCAGCCGGT TCATCGCCTG TACCAAGTAC
CCGGACTGCA CCTATACCGC GCCCTTCTCC ACCGGCGTGC CCTGCCCGCG CGAAGGGTGC
GAGGGCGTGC TGGTGGAAAA AAGCTCCAAG CGCGGCAAGA TATTCTATTC GTGCAGCGCC
TACCCCAAGT GCGACTACGC CCTGTGGGAC TGGCCCGTGC CCGGCCCCTG CCCGGACTGC
AATTCACCCC TGCTGGTGAT CAAGAACACC CGCGCCCGGG GCCGCCACAT CGCCTGCCCG
GAAAAGACCT GCAAGTATTC CCGTGATCTG GACGAGGACG GCGGCGGCGA GGAATAG
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| Protein sequence | MGKDLIIVES PAKVKTIKKF LGGNYAVHAS VGHVRDLPTS ELGVDEANGF APRYQVIDGK
QKVVSALKEA AAKADNVYLA PDPDREGEAI AWHVAELIRD KNTNIQRIQF NEITARAVKE
ALENPRELNR NLFDAQQARR VLDRLVGYKL SPLLWKKVKR GISAGRVQSV ALRLIVDREN
ERRAFNPEEY WLFRARLAGA TPPPFRADLH KLHGKKPAIG SAADAAAVEA SMQGQPFVIT
GIDEKERQRQ PQPPFITSTL QQSASQRLGY SAKRTMNIAQ RLYEGVELGE AGTVALITYM
RTDSVRIADE ARDAAREFIA ATWGGDHLPA KARQFKTKGG AQDAHEAIRP VDVSVTPDSV
RHLLPPDQFQ LYRLVWQRFV ASQMAAARFH DTTVTIACGP VEWRAKGERL LFPGFLAASP
QKEAQDGEEV AEGDLPKLSV GEELTALSVE KEQKFTQPPA RYTEASLVRE LEERGIGRPS
TYAAIISTLL DRDYARLEEK HFAPTDLGAV VCDLLAGHFT TLMDVDFTAQ MEGSLDKVAE
GELDWVKLLE DFTGGFNPVL ERAAQAMDTV KGGLPSGIDC ELCGKPMVIK FGKAGTFLAC
SGYPACRNTK NFTRDEKGNI QVEQKLREEP EKVGTCPQCG GDLVLKKART GSRFIACTKY
PDCTYTAPFS TGVPCPREGC EGVLVEKSSK RGKIFYSCSA YPKCDYALWD WPVPGPCPDC
NSPLLVIKNT RARGRHIACP EKTCKYSRDL DEDGGGEE
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