| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_2042 |
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| Symbol | |
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| ID | 7173961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2532982 |
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| End bp | 2534574 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643540559 |
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| Product | NusB/RsmB/TIM44 |
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| Protein accession | YP_002436453 |
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| Protein GI | 218887132 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 81 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCCC GGCGTCCCCA ACCCCACGCA AAGGGTGCCC CCCTGCCTCC GGCCCGTGCC
GCTGCCCTTG CCGCCCTGGA CAAGGTGCTG CGCAAGGGGC AGGAGGTGCA GGCCGCACTG
GACGCCGTGC TTGCGGATGC TGCCGCACGC AATGAAGCGA GCGCACGCGC AAACGCAAGC
AAGGCATCTG CCAGCAATAG CGCCACACAC TCCGCAAACA CCTCCTCGAC CACACCAGAC
GGCTCCGCAT TGCGGCATGC CGGAATTTCG CGTCAGGACG CCGCCCTGGC CACGGAACTC
GTCTACGGGT ATCTGCGGTC GGAAATCCGC ATTTCGTGGC TCCTGCGCCG CTTCCTGACG
GCCCCGGAGA AGTTGCCGCA GGAGGCCTTG CTGACCCTTG GCGTGGCCGC GCACGAAATC
GTGCACCTTG ACCGCATCCC CGACTACGCG GCGGTGGACT GGGCCGTCAC CCACATCCGC
CAGCGCTTCG GCCCCGGTCT CGGCAAGCTG GCCAACGCGG TGCTGCGCAA CGTGGCCCGG
CTGGGCGACG ATGCCCGCAA CGCGGAGATG TACCACGCCG ACCTGCCGGA ACCGCGCGAT
TTCCTGTCCG TGCACCATGC CGCACCGCGC TGGCTGGTGG ACCTGTGGTG CGATGCGTAC
GGGCCCGGCC GCGCCGCCGA CCTGCTGGCT GCCAGTGCCC AGGCTCCGGC CCCGGCGGTG
CGCGTCAATG CCGCCCGTTC CGGCTGGCAG GCGCTGCGTG ACCAGTTGAT TGCGGATCAC
GGCGGCACCG CCTGCGGCCA TGCCGGAGTG GTCTTTCCCG TCGGCGGATT TCCGGCGGAG
GTTGCCGCGC TGGAACGCGC GGGGCTGCTG TCGCGACAGG GCGCGGCATC GCAGGAAGTG
CTGGACGCAT TGCTCCCGGA TACCTGGGAA GGCCCGGTGT GGGATGCCTG CTGCGGACGC
GGAGGCAAGG CGCTGGCCCT GCTGGAGCGC GGCGTGGACG TGCGCCTGTG CAGCGACCCC
AATGCGGGCC GCCTGCGTGG CCTGCGCGCC GATGCCGAAC GGCTGGGGCT TACCGTGCCC
GCCATCGTCC GTGCCTCCGC AACGCAACCG CCCTGCGCAA CGGACAGCCC CAGCGCCGCA
GGCGGACCGG CTGGCCCGGC CCTGCCAGTT CAGCCAGTTC AGCCAGTCAC ACCAGACACG
TCGGGCACGC CACACACGCC GGGCACAAAT GACGGAACGA CCAGCTCGTG CGCCCTCCGC
ACCATTCTCA TTGATGCGCC CTGTTCCGGA CTGGGCACCC TTTCCCGCCG CCCGGACATC
AAGCTGCGCC GCTCCCCCGC CGACCTCGAC GCGCTTGCCG CGTTGCAAGG CAGGATACTT
GATGCCGCCC TGTCCGTGCT GCCCACGGGT GGTCGGCTGG TGTACATCAC CTGCACCCTG
AACCCCGCCG AGAACGAGGC GCAGGTCGAA CGTCTGTTGT CCCTGACCGG TGCCGCCAGC
GCCACCCCTG TCACTGTTGA AGTGCAGCAC ACCACCCCCG CCGACACCCC GGCCCGTGAA
TTCTTTTTTG GCGTGGTGTT GCGCAAGGGG TAA
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| Protein sequence | MSARRPQPHA KGAPLPPARA AALAALDKVL RKGQEVQAAL DAVLADAAAR NEASARANAS
KASASNSATH SANTSSTTPD GSALRHAGIS RQDAALATEL VYGYLRSEIR ISWLLRRFLT
APEKLPQEAL LTLGVAAHEI VHLDRIPDYA AVDWAVTHIR QRFGPGLGKL ANAVLRNVAR
LGDDARNAEM YHADLPEPRD FLSVHHAAPR WLVDLWCDAY GPGRAADLLA ASAQAPAPAV
RVNAARSGWQ ALRDQLIADH GGTACGHAGV VFPVGGFPAE VAALERAGLL SRQGAASQEV
LDALLPDTWE GPVWDACCGR GGKALALLER GVDVRLCSDP NAGRLRGLRA DAERLGLTVP
AIVRASATQP PCATDSPSAA GGPAGPALPV QPVQPVTPDT SGTPHTPGTN DGTTSSCALR
TILIDAPCSG LGTLSRRPDI KLRRSPADLD ALAALQGRIL DAALSVLPTG GRLVYITCTL
NPAENEAQVE RLLSLTGAAS ATPVTVEVQH TTPADTPARE FFFGVVLRKG
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