| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1962 |
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| Symbol | |
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| ID | 7173880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 2424917 |
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| End bp | 2425864 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 643540478 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_002436373 |
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| Protein GI | 218887052 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 98 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCAC ATCCGTTCCT GCCCCGCGAA CTCTACGGCA TCATCGGCCA TCCCCTCGGC
CATACAATGA GCCCCCTGCT GCACAACTGG GGCTTCAGCC TGCTGGACGT GCCCGCCGTG
TACATGGCCT GGCCGCTGGA GCCGGGCCGC GTGGGCGATT TCATCACCGC CGTGCGCACC
CTGCCCATAC GCGGGGCCAG CGTCACCATT CCCCACAAGC AAGCCGTGCT GCCCCTGCTG
GACGGCGTCA GCGACCGCGC CCGCGCCGTG GGCGCGGTGA ATACCCTGTA CTGGCGCGAC
GGCCAGCTGC TGGGCGAAAA CACCGACGTT ACCGGCTTTC TGGCCCCGTT GCGCCAGCGC
GCGGCAGCAG GGTGGCGGTG CGAAAGGGCG CTGGTGCTGG GCAACGGCGG CGCGGCCCGC
GCCGTGCTGG CCGGTCTGCG CGAGCTTGGC CCCGCCGGTG ACGGCGTGGT GCGCGCGGTG
GGCGTCACCG GGCGCAACGC GGAAAAGGCC GCCCCGCTGG CCGCCGAATT CGGCGCGGAA
GTGGTGGACT GGGATGCGCG CGTCCACTGG GGCGCGGACC TTGTGGTCAA CACCACGCCC
ATGGGCATGT CCGGCGAGCG ACAGGGCGAT ACCGCCTTTC CGGAACAGGG GTTTGCGGCA
CAGGGCGTTG CGGCAGGGGG AGATGGGAGG CGCGGGCTGG CCTACGACCT TGTCTACAAC
CCGCTGCGTA CCCGCTTCCT GTCCGAGGCC GCCGACGCGG GCTGGGATAC GCAGGACGGC
CTGGGCATGT TCGTGGAGCA GGGCCGCGAA CAGTTCCGCC TGTGGACCGG GCTGGAACTG
CCCGCCGAAG GCGCGCGCAC CCTGGTTGCC GTGGCCCTTG GGCTGGGCGA CGTGGCGGTG
GGCCGCGTCT GCGGCCAGTG CGAACTGCCC GGCTTGGGCA AGGGCTAA
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| Protein sequence | MPAHPFLPRE LYGIIGHPLG HTMSPLLHNW GFSLLDVPAV YMAWPLEPGR VGDFITAVRT
LPIRGASVTI PHKQAVLPLL DGVSDRARAV GAVNTLYWRD GQLLGENTDV TGFLAPLRQR
AAAGWRCERA LVLGNGGAAR AVLAGLRELG PAGDGVVRAV GVTGRNAEKA APLAAEFGAE
VVDWDARVHW GADLVVNTTP MGMSGERQGD TAFPEQGFAA QGVAAGGDGR RGLAYDLVYN
PLRTRFLSEA ADAGWDTQDG LGMFVEQGRE QFRLWTGLEL PAEGARTLVA VALGLGDVAV
GRVCGQCELP GLGKG
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