Gene DvMF_1933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_1933 
Symbol 
ID7173851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp2384612 
End bp2386036 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content62% 
IMG OID643540449 
ProductPAS modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002436344 
Protein GI218887023 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones98 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACAA CGCATGATGC CATAGTCAAC GACGCAGTCA CCTTTCTGAT ATTCGACCAT 
TTACCCATGG GCATTCTGTA TTGCGACGCC AGCTACGTGA TCCGTTTTGC CAACAAGGCC
TATGCGGAAC TGCTGGGCAA GCGCCCCCAC GACATCATCG GCAGGAACAT TACCGAGGTC
ATTCCCTCGT CGCGCGCGCC AGAGGTAATG ACCACCGGCC AGGCGGAAAT GGGTGACCTG
TGCAGCATCC CCGGCCCCCG GGCCGATCAG AAGCTGGTGG TGAACCGCAT TCCCGTGCGC
GATGCCGCGG GTGCGCTTGT CGGCATGATC TCGCAGGCCA TCTTCAATGA CCCCAGCGAA
CTGAAACGCC TTTCCAACAA GATAGAGCAA CTGGGGCACA AGCTCAGCCA GTACAAGCGG
CGCATGGCGG CCACCCTGCA TGCCCAGTAT TCGCTCGCCA GCCTGAAGGG CGAAAGCGCC
TCCATGCACC AGATCAAGGA CCGTCTGCGC AGCTACGCCC GCATGGATGC GCCGGTCCTT
GTCCTGGGCG CCACCGGCAC GGGCAAGGAA CTGGCAGCCC ATGCGCTGCA CGCCGAAAGC
ACGCGCGCCG CCGGGCCGCT GGTCAGCATC AACTGCGCGG CCATTCCCAA GGATCTCTTC
GAATCCGAAC TGTTCGGGTA CGTGCGCGGG GCATTTTCCG GCGCCCATCA CAGCGGGAAA
ATGGGCCAGA TAGAGTTGGC AGACGGCGGC ACCCTGTTTC TGGACGAAAT AGGCGACATG
CCCCTTCAGG CGCAGGCAAA GCTGTTGCGC GTACTGGAAA GCCGCACCAT CTGCCGCGTG
GGCGCGGTAA CGGCGGAACC CGTGGACTTT CGGCTCATTG CGGCCACCAA CCGCAACATC
AAGGACATGG TCCAGGCTGG CACGTTCCGC GAAGACCTGT ATTATCGCAT CAATACATTC
ATCATAGAGA TTCCTTCGCT ACGCGACAGG AAGGAGGACA TCCTGCCTCT GGCGCATCAC
TTTCTGGCTC GCATGGGGCA CGAGGGCGTA ACCTTTACCC CCGCCGCAGT ATCTGCGCTG
CAATCGTTCG AGTGGCCGGG CAACATCCGG CAACTGCACA ACGCCATCCT GCATGCCGCC
ACCATGCGCG AAGGCAGCGC CATAGACGTC TGCGCCCTGC CCCCGGAAAT ACGCCCGGTC
CATACCAGCC CTGTCGCGCC TTGCCCGCTA CCGCAGGACA GGAGCGACCT TGCGGGCATT
CTGGCCCACA ACGAGGCCGC TCTCATTGAA AATGCCCTGC GCGAGCAGGG CGGCAATGTC
ACCAGGGCCG CATCCGCGCT GGGGGTTTCG CGCGCCACGC TGTACGAGAA GATGAAGAAG
CACGGCGTCC ATGCCGTGCG TTCTCGCGAC AGGCAGGGGA ACTGA
 
Protein sequence
MPTTHDAIVN DAVTFLIFDH LPMGILYCDA SYVIRFANKA YAELLGKRPH DIIGRNITEV 
IPSSRAPEVM TTGQAEMGDL CSIPGPRADQ KLVVNRIPVR DAAGALVGMI SQAIFNDPSE
LKRLSNKIEQ LGHKLSQYKR RMAATLHAQY SLASLKGESA SMHQIKDRLR SYARMDAPVL
VLGATGTGKE LAAHALHAES TRAAGPLVSI NCAAIPKDLF ESELFGYVRG AFSGAHHSGK
MGQIELADGG TLFLDEIGDM PLQAQAKLLR VLESRTICRV GAVTAEPVDF RLIAATNRNI
KDMVQAGTFR EDLYYRINTF IIEIPSLRDR KEDILPLAHH FLARMGHEGV TFTPAAVSAL
QSFEWPGNIR QLHNAILHAA TMREGSAIDV CALPPEIRPV HTSPVAPCPL PQDRSDLAGI
LAHNEAALIE NALREQGGNV TRAASALGVS RATLYEKMKK HGVHAVRSRD RQGN