| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1907 |
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| Symbol | |
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| ID | 7173825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 2348832 |
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| End bp | 2351996 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643540423 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002436318 |
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| Protein GI | 218886997 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 93 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACTG GCGAACAGCA TCAACCCGCC ACCGTGACGT CGGAGCCTCC TCCGCCCCCA
CTCGGTCCCC GTCGCAGCCT GCGCGGGGGT GCGGCCTTCG GCCTTACGGC CATCCTCGGC
GCACTGGGGC TGATATGCGT GCTGGCAACC GGGTCGCTGG TGGTCGGCAG GCTCGACGCC
TTCGAGCACG AACTTGCCGC GGCCAACGCC CGCCGGGCGG TCAACGCGCT GCAAAGCGAC
GTGCGCAGAC TGGATGCGCT GCTCAAGGAC TGGGCCTGGT GGGATGACTC CTACCAGTTC
ATGGTCGACG TCAATCCCGC CTACATTGAA AGCAACATCA CGCCGGAAGT CTTTCGCGAC
CAGCATCTGG ACGCCATCGT CTTCATTTCC GTCGACGGAC AGGTAGCCCA CTCCGCCGCG
CCGGACATTG TCAGCGGCGG CGTGGAAAAG GCCGACCCAT CCCTGCTTGC CTTCATGCGC
CAGGCCGTCG CCACGCTGCC GCACACCGTG CAGCATGACG GGCTGTCCGG GCTGGTCCGC
ATCGGCGACG CCACCTGGAT GACGGCCTGC CGCCCGGTGC TCGATTCGCA GCAAGGCAGC
CCCGCCCGGG GCTGGATATG GATGGCCCGT CTGGTCGACG ATCCGTACCA GAAGGAGCTG
GCCCGGAACA CGGAACTGCA ACTCGCCCTT GTTCCGGCCC TGGCCGAAAA CCTGCCCCAC
GTCCTGCGGC AACTTGCCGA TGTGGCCGCA GCCGCCCCCA AGCGGGACAA GCCCGCACCG
GAAACTCCGG TGGTGGGCGT GGACAGCCAC ACAATCTGGA GCGGGGTGCT GCTGGCCGAC
CTTGGCGGCG GCCCCCCTCT GGCCGTCACC GTCCAGGCCC ACCGCGCCCT GGGCGAAACC
GCCCGCAACA TCGTGCACAG CGGCTTGCTG GTGGTGCTGA CGCTGAGCAT CCTTGCACTG
ATCGCAGGCC TGCTCTTTCT TGACCGCCGC GTGCTGTCGC GGCTTGCCGC ACTCAGCGCC
CAGGTTGCCG CCAACGTTCC CGCCGCCAAA CTGGCCACCA TGCCGCAGGG CGGTGACGAA
CTGGACAGGC TGGCCCTGGT CACCTCGTGG GCATTCCAGT CCATCCGCGA GAACGAGCAG
TTCCTGTCCG AGATGCTCGA TGCCCTCAAG GTGGGTGTCA TGCTTGTGGA CCGCGAAACC
CGCACCATCG TCAGCATCAA CAGCCACGCC TGCGCGCTGC TGGGGCGCGA TGCCGCCGAA
GTGACGGGCA GGCGCTGCCA CCAGTTCGTA TGCCCGGCGG AAGAAGGCGC ATGCCCGGTG
TGCGACCTGG GCCTGCCCAT GGATCATGCC AAGCGCAACC TGCTGACGGC CACCGGAAGC
CTGGACATCC TGAAGTCCGT GGTGCCCATA TCGCGCGAAG GCAAGGAGTA TCTGCTCGAA
ACCTTCATAG ATATCAGCGA TCTGGAACAC ACCCGGCGGA TGCTGGAAGA ATCGGAAGAG
CAGTACCGGG CCATGTTCCT GAACACGGGC ACGCCCGCCA TCCTCATCAA CGAGGACACC
ACCATCGCGC TGGCCAACCC GGAATTCCTG CGGCTGGTCC GCATGGTACA GGCCGACCTG
GACCACCGCC CGTCGTGGAC GGGCTTCTTT CACGAGCACG ACCTGCCCCG CATGCTGGGG
TACCATGCCG ACCGGCGCAA CGGCGTTGCC GCCCCGCGCG AATACGAAAC CCGGCTGATC
GACGCCGCCG GGGGGCTGCA TCATGTGGCC ATGACCGTGA CCATGATTCC CCATACCCAC
CAATCGGTGG CCTTCATCCG CGACATCACG GACATGAAGC TGGCCGAAGC GCGCCTGCAG
GAACTGGCCT TCACCGATTC GCTCACCGGT CTCCCCAACC GGCTGCGCGG GCTGGAAACC
CTTGACGACA TGCTGACCGA GGCCCGCCGC AAGGCGCAGC CGCTGGGCGT GCTGCTGCTG
GACCTGGATG ACTTCAAGCT GGTCAACGAC TCCATGGGGC ACGCCACGGG CGACGTGGTG
CTCATGGAGG TAGGCAGGCG GCTGGGGGCA GTGCTGGATC CCGACGAGGC CGTGGCGCGC
CTTGGCGGCG ACGAATTCAT CATCTTCACG GCGGCGCGCG GCGGGTCCGA GGCCCACGCC
GAACTGGCGA AGCGGCTCAT CACGGAATTT TCCACGCCCT TCCGCGTGGC CCATTCCGAA
GTGTACCTTG GCGTCAGCAT CGGCATAGCC GCCTTTCCCG CCGACGGGGA CACCGGCGGC
CATCTGGTGC GCTGCGCCGA CCTGGCCATG TACCGGGCCA AGGCGTCCGG CAAGAACACC
TACCGCTTCT ACACCCCGGA ACTGACCCGC GCGGCGCAGC ACAGGCTGGA GGTGGAAGCC
GAGTTGCGGC CCGCCATCGC GCAGGGGCAC ATCGTGCCCT ACTACCAGCC TGTGGTGGAC
CTGGGCAGCG GGCGCATCGT GGGGGCAGAG GCGCTGGCGC GCTGGCGCAA GCCGGACGGC
AGCCTGGTAG CGCCCGCCGA GTTCATTCCC GTGGCCGAGC AGACGGGCCT TGTCACCAGC
ATCGACATGG CCGTGATATC GCGGGCCTGC TCGCAGACAC TGGCCTGGAC GGAAGCGGGT
CTGGGCCGGT TGCGCGTGTC GTGCAACATT TCGGCGCGCC ACCTGCAACG CGGCAACCTG
CCGGGAGACA TCCGCGCCAT TCTCGACGCC AGTGGGCTGT CCGCAGCGCA ACTGGCCCTG
GAAGTTACCG AAACCGTGTA CATGGAAAAC ATCGACAAGG CCCGGGCCAT GCTCGATGCG
GTGACGGAGC TTGGCGTGCC CATCGTGCTG GACGACTTCG GCACCGGCTA TTCGTCGTTG
TCGTACCTGC AATCGCTGTC ATTCGACATC ATCAAGATCG ACCGTTCGTT CGTGAAGGAT
CTGCCCGACG CCTCGTCGCT GGCGCTGCTG CGGGCCATGC TGGGCATTGC CGCGGGGCTT
GGCGTCACCT CGCTGGCCGA AGGCGTGGAA ACCGTGGAGC AGTACGTGCT GCTGAAATCG
CTGGGGTGCG GCAAGGGGCA GGGTTACCTG TTCTCGCCCC CCGTGCCCGC CGCGCGGTTC
GAGGAACTGT TGCGCGAACA GAAGGCGGGC AAGCGCTTTC CCTGA
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| Protein sequence | MNTGEQHQPA TVTSEPPPPP LGPRRSLRGG AAFGLTAILG ALGLICVLAT GSLVVGRLDA
FEHELAAANA RRAVNALQSD VRRLDALLKD WAWWDDSYQF MVDVNPAYIE SNITPEVFRD
QHLDAIVFIS VDGQVAHSAA PDIVSGGVEK ADPSLLAFMR QAVATLPHTV QHDGLSGLVR
IGDATWMTAC RPVLDSQQGS PARGWIWMAR LVDDPYQKEL ARNTELQLAL VPALAENLPH
VLRQLADVAA AAPKRDKPAP ETPVVGVDSH TIWSGVLLAD LGGGPPLAVT VQAHRALGET
ARNIVHSGLL VVLTLSILAL IAGLLFLDRR VLSRLAALSA QVAANVPAAK LATMPQGGDE
LDRLALVTSW AFQSIRENEQ FLSEMLDALK VGVMLVDRET RTIVSINSHA CALLGRDAAE
VTGRRCHQFV CPAEEGACPV CDLGLPMDHA KRNLLTATGS LDILKSVVPI SREGKEYLLE
TFIDISDLEH TRRMLEESEE QYRAMFLNTG TPAILINEDT TIALANPEFL RLVRMVQADL
DHRPSWTGFF HEHDLPRMLG YHADRRNGVA APREYETRLI DAAGGLHHVA MTVTMIPHTH
QSVAFIRDIT DMKLAEARLQ ELAFTDSLTG LPNRLRGLET LDDMLTEARR KAQPLGVLLL
DLDDFKLVND SMGHATGDVV LMEVGRRLGA VLDPDEAVAR LGGDEFIIFT AARGGSEAHA
ELAKRLITEF STPFRVAHSE VYLGVSIGIA AFPADGDTGG HLVRCADLAM YRAKASGKNT
YRFYTPELTR AAQHRLEVEA ELRPAIAQGH IVPYYQPVVD LGSGRIVGAE ALARWRKPDG
SLVAPAEFIP VAEQTGLVTS IDMAVISRAC SQTLAWTEAG LGRLRVSCNI SARHLQRGNL
PGDIRAILDA SGLSAAQLAL EVTETVYMEN IDKARAMLDA VTELGVPIVL DDFGTGYSSL
SYLQSLSFDI IKIDRSFVKD LPDASSLALL RAMLGIAAGL GVTSLAEGVE TVEQYVLLKS
LGCGKGQGYL FSPPVPAARF EELLREQKAG KRFP
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