| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1766 |
|---|
| Symbol | |
|---|
| ID | 7173682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 2162420 |
|---|
| End bp | 2164123 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643540282 |
|---|
| Product | sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family |
|---|
| Protein accession | YP_002436179 |
|---|
| Protein GI | 218886858 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 86 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAACG GTCCGGGGTG CGACGCGGCA CCCCGGACCG CACCCCCCGA CGCCGGACGC
CCCGTGTCCT CACCCAGCGC CCGGCATAAC GCGCAACGAC GGAACAGGTG CTTCGTGTCC
ACGCAGCAGA CAGGCCCAGC AGCCCCGCAC AGCATCCGGC CCCGCGCCGG GTCGCCCGCA
CGTCACGGCG CGCCGCCGCT GCCGCACGTG TCGGGCATCT CGCCCCTGCC GGTGGACCTG
GCGACCATGC TGGACGCCCT GCCCGTGGGC GTGGCCCTGC TGGACACCGA CTGTTCCATC
CGCCTGATGA ACCGCGCGCT GGAAACCCTG ACCGGGTTCA CCACGGCGGA AGTGCGCGGC
ATACCCTGCC GCCACGCCCT GCGTGCCAGC ATCTGCCTGC ACCGCTGCCC GCTGCGCCGC
CCGCTGACCA CCGCATCGGG TGTCACCGTG GCCACGGCGT CGGGCGCGCA TTACGACATG
ATCGACGACG GCGAACTGCC CCCCGCGCAG GAAGGCGACA TCCTGAACCG CCATCGCCGC
CGCATCCCGG TGCGCATGAG CATGTCCCCC CTGCGCGATG CCGATGGCCG CGTGGTGGGC
TGGCTGCACG CCGTGGAAGA CCTGACGCTG GTGCGCGAGC TTGAGGAAAA GACCGCCAAG
GGAGAGGCCT TCGGCCCGCT GGTGGGACGC AGCGTGGCCA TGGAACGGGT GTTTCAGGCC
CTGCCCGCCG TGGCACAGAA TGACGGCCCC CTGCTGGTTA CCGGCGAGAC GGGCACCGGC
AAGGACACCC TGGCCGAGGC CGTGCACAAG GCGTCATCCC GCGCCCGCGA GCCGTTCGTG
AAGGCCAGCC TGTCGTCCCT GCCCGAATTT CTGGCCGAAT CGGAGCTGTT CGGCCACCGC
AAGGGCGCCT TCCCCGGCGC GGAAGAAAAC AAGCCGGGCC GGTTCCGCCT GGCCCAGGGC
GGCACGCTGT ACCTCACCGA GATCGGCGAT TTGCCCCTGT CCATCCAGGG CCGCCTGCTG
GCCTTCCTTG ACGAGGGGGT CATCTACCCC GTGGGCGCCA CCGAGCCCGT GGCTTGCGAC
GTGCGCCTGG TGGTGGCCAC CAACCGCGAC CCGGAACAAC TGGTGGCCGA AGGCCGCCTG
CGCGAGGACC TGTTCCGCCG CCTGTCCGCC GTGCGCCTGC ACCTGCCCCC CCTGCGCGAC
CGGGGCGAGG ACATCGAATT CCTGCTCAAC CATTTCATGG GGCATTTTGC CGCGCGGATG
AAAAAGACCG TGCGCGGCTG CTCGGGCAAG GCCCTGCGCA CCCTGTTGGA CTACCCCTTC
CCGGGCAACG TGCGCGAGTT GCGCAACATC GCCGAATACG CCGTCACCCT GTGCCACGGT
GAAACGGTGA TGCCCGCGCA CCTGCCCGCG TATCTTTTCC AGGCCAAGGC AGAGGCCCGC
CGCGCCGAGC GCGAGCGCAG GGCCGGGCGC GGCATTCCCG GCGAGCCCGA CGCCTCCGGC
GCGCCCGGTG ACGCGCAGGG TTCCGCGCAG GCAGCCGCCG ACATGGCCGA GCCCCTGGCC
CGGGCCAGCG TCAGCGACCT GGAACGCCGC CTTATCGCGG ACGCCCTGCA ACGCACCGGC
AACCGCCGGG GCGAGGCTGC GGAACTTCTG GGCTGGGGCC GTTCCACCCT GTGGCGCAAG
ATGAAACAGT ACGGGATGTG CTGA
|
|---|
| Protein sequence | MGNGPGCDAA PRTAPPDAGR PVSSPSARHN AQRRNRCFVS TQQTGPAAPH SIRPRAGSPA
RHGAPPLPHV SGISPLPVDL ATMLDALPVG VALLDTDCSI RLMNRALETL TGFTTAEVRG
IPCRHALRAS ICLHRCPLRR PLTTASGVTV ATASGAHYDM IDDGELPPAQ EGDILNRHRR
RIPVRMSMSP LRDADGRVVG WLHAVEDLTL VRELEEKTAK GEAFGPLVGR SVAMERVFQA
LPAVAQNDGP LLVTGETGTG KDTLAEAVHK ASSRAREPFV KASLSSLPEF LAESELFGHR
KGAFPGAEEN KPGRFRLAQG GTLYLTEIGD LPLSIQGRLL AFLDEGVIYP VGATEPVACD
VRLVVATNRD PEQLVAEGRL REDLFRRLSA VRLHLPPLRD RGEDIEFLLN HFMGHFAARM
KKTVRGCSGK ALRTLLDYPF PGNVRELRNI AEYAVTLCHG ETVMPAHLPA YLFQAKAEAR
RAERERRAGR GIPGEPDASG APGDAQGSAQ AAADMAEPLA RASVSDLERR LIADALQRTG
NRRGEAAELL GWGRSTLWRK MKQYGMC
|
|---|
| |