| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1720 |
|---|
| Symbol | |
|---|
| ID | 7173635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | + |
|---|
| Start bp | 2103157 |
|---|
| End bp | 2104395 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643540236 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_002436134 |
|---|
| Protein GI | 218886813 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 87 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCC AGAACTCCAC ACAGCAGCCC ACCATCTTCA TCGCCCGGCA GCCCATTTTC
GATGCAACGG GAACGCTGTG GGGGCACGAA CTGCTGTTCC GCGACAGCCC CAGCGGGCCC
GCGCGCATCG ACGACCCGGA TGCGGCCACC GCCTCGGTCA TCGCCGACGG CTACGCCATC
GCCAGCGAGA CCATACCCGG CACCACCCCC TTCCTGATCA ACTTTCCCGA AGGGTTGCTG
CTGTCCGGCG CGGCGGAAGT GCTGCCGCCG GACCGGTGCA TCCCCGAAAT TCTCGAAACG
GTGCAGCCCA CGCCGGAACT GGTGGATGCA CTGCACACCC TGAAACGGGC GGGCTACCGG
CTGGCCGTGG ACGACTTCGT GGGGCAGGAC CAGGCCCAGC CGCTGCTGGG GCTGGCGGAC
ATCATCAAGG TGGACGTGCT GGGCGTGCCC CCGGCGGAAC TGCCCGCGCT CACGGCCACC
CTGCGCAAGC GCCACCACGC CGTGCTGCTG GCGGAAAAGG TGGAAACCGC GGCCATGTTC
GGCCAGTGCC GCATGCTGGG GTACACCCTA TTCCAGGGCT ACCACTTCGC CAGGCCGGTC
ATCGTGCCGG GGCGCACCCT GTCGTCGGGT CAGACCTCGC GCCTGCACCT GATGCAGTCG
CTGGCCGGCG AAGCCGACCC GCACAAGCTG GTGCGCGCCG TGACCGTGGA CCCCGGCCTG
ACCTACCGCC TGCTGCGGTA CATCAATTCG GCGTGGTTCG CCCTGCTGAA GGAAGTAACC
TCGGTCCAGC ACGCGGCATC GCTGCTGGGC TTCGAGACGC TGCGCAAGTG GCTGCTGGTG
ATCACCCTGG CCGACACGGC GGGCAGCGCC GCCCCGCCCG AAGTCATGCG ACTGGCCGTG
ACCCGAGCGC GCTTTCTGGA ACTGTTGTGC GGCCTTGTGC GCACCTGCAC CCATGCGCCG
GAATCCATGT TCCTGCTGGG GCTGCTGTCG CAACTGGACG CGCTGCTGGG CATTCCCATG
CCCGTGCTGC TGGCCCACCT GCCGCTGGAC GCGGACTTTC GGGCCGCCCT TTCCGGCGAG
CCTTCGCCCA TGCACGACGA ACTGCACTTG GCCGTGCTGC TGGAGCGCGG CGCCTGGGAC
GAGGCCCTGC CGCTGATGAC GAAGCTGGGC TTTTCTCCCA TGGACGTGGC CCGCAGCAGC
ATCGACGCCC AGATGTGGGC CAGCCGGATA TTGAGCTAG
|
|---|
| Protein sequence | MQPQNSTQQP TIFIARQPIF DATGTLWGHE LLFRDSPSGP ARIDDPDAAT ASVIADGYAI
ASETIPGTTP FLINFPEGLL LSGAAEVLPP DRCIPEILET VQPTPELVDA LHTLKRAGYR
LAVDDFVGQD QAQPLLGLAD IIKVDVLGVP PAELPALTAT LRKRHHAVLL AEKVETAAMF
GQCRMLGYTL FQGYHFARPV IVPGRTLSSG QTSRLHLMQS LAGEADPHKL VRAVTVDPGL
TYRLLRYINS AWFALLKEVT SVQHAASLLG FETLRKWLLV ITLADTAGSA APPEVMRLAV
TRARFLELLC GLVRTCTHAP ESMFLLGLLS QLDALLGIPM PVLLAHLPLD ADFRAALSGE
PSPMHDELHL AVLLERGAWD EALPLMTKLG FSPMDVARSS IDAQMWASRI LS
|
|---|
| |